hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-22131815/chunk_1/iprscan-20080501-22131815.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1273 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00004.19.fs ATPase family associated with various cellul 115.7 8.9e-35 1 PF00004.19.ls ATPase family associated with various cellul 117.7 3.1e-32 1 PF07726.2.fs ATPase family associated with various cellul 20.6 6.1e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00004.19.fs 1/1 305 501 .. 1 215 [] 115.7 8.9e-35 PF07726.2.fs 1/1 305 332 .. 1 28 [. 20.6 6.1e-06 PF00004.19.ls 1/1 305 501 .. 1 215 [] 117.7 3.1e-32 Alignments of top-scoring domains: PF00004.19.fs: domain 1 of 1, from 305 to 501: score 115.7, E = 8.9e-35 *->gvLLyGPPGtGKTllAkavAnelgapfisisgselvskyvGesekrv ++LLyGPPGtGKTl Ak +A ++g + + g +v+ e++++ KIAA1273 305 HILLYGPPGTGKTLFAKKLALHSGMDYAIMTG-GDVAPMGREGVTAM 350 ralfelArkslkaaPspiiFIDEiDalapkRgd..egdvssrvvnqLlte ++lf+ A s + + +F+DE+Da+ +kR ++ + + ++++n++l KIAA1273 351 HKLFDWANTS--RRGL-LLFMDEADAFLRKRATeeISKDLRATLNAFLYH 397 mDLErigfedhylrgsdvfDlsgviviaaTNrpdllDpALlrpGRfdrri m +h +++++++a+N p++ D A+ + R+d+ + KIAA1273 398 M-------GQH---------SNKFMLVLASNLPEQFDCAINS--RIDVMV 429 evplPdeeeRleIlkihlkkmplalcqer.selakdvdldelak.e.lAr +++lP eeR++ + h+++ l + ++ ++k +d+ k +++Ar KIAA1273 430 HFDLPQQEERERLVRLHFDNCVLKPA-TEgKRRLKLAQFDYGRKcSeVAR 478 rtpgfsgadlaalcreAalralr<-* +t+g+sg+++a+l+ + a KIAA1273 479 LTEGMSGREIAQLAVSWQATAYA 501 PF07726.2.fs: domain 1 of 1, from 305 to 332: score 20.6, E = 6.1e-06 *->HvLlegvPGlaKTllvkalAkaldlkfk<-* H+Ll g PG++KTl++k+lA + +++++ KIAA1273 305 HILLYGPPGTGKTLFAKKLALHSGMDYA 332 PF00004.19.ls: domain 1 of 1, from 305 to 501: score 117.7, E = 3.1e-32 *->gvLLyGPPGtGKTllAkavAnelgapfisisgselvskyvGesekrv ++LLyGPPGtGKTl Ak +A ++g + + g +v+ e++++ KIAA1273 305 HILLYGPPGTGKTLFAKKLALHSGMDYAIMTG-GDVAPMGREGVTAM 350 ralfelArkslkaaPspiiFIDEiDalapkRgd..egdvssrvvnqLlte ++lf+ A s + + +F+DE+Da+ +kR ++ + + ++++n++l KIAA1273 351 HKLFDWANTS--RRGL-LLFMDEADAFLRKRATeeISKDLRATLNAFLYH 397 mDLErigfedhylrgsdvfDlsgviviaaTNrpdllDpALlrpGRfdrri m +h +++++++a+N p++ D A+ + R+d+ + KIAA1273 398 M-------GQH---------SNKFMLVLASNLPEQFDCAINS--RIDVMV 429 evplPdeeeRleIlkihlkkmplalcqer.selakdvdldelak.e.lAr +++lP eeR++ + h+++ l + ++ ++k +d+ k +++Ar KIAA1273 430 HFDLPQQEERERLVRLHFDNCVLKPA-TEgKRRLKLAQFDYGRKcSeVAR 478 rtpgfsgadlaalcreAalralr<-* +t+g+sg+++a+l+ + a KIAA1273 479 LTEGMSGREIAQLAVSWQATAYA 501 //