hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-22114268/chunk_1/iprscan-20080501-22114268.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1272 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02145.6.fs Rap/ran-GAP 86.8 4.3e-26 1 PF02145.6.ls Rap/ran-GAP 70.1 6.4e-18 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02145.6.fs 1/1 852 983 .. 1 142 [. 86.8 4.3e-26 PF02145.6.ls 1/1 852 1016 .. 1 192 [] 70.1 6.4e-18 Alignments of top-scoring domains: PF02145.6.fs: domain 1 of 1, from 852 to 983: score 86.8, E = 4.3e-26 *->lysNeeaspaFdeFLtlLGqrvrLKdfepDkvYrGGLDvkgddTGth ++sNe +s a+++F +LG v L + + + GGL +++++TG++ KIAA1272 852 ILSNERGSQAYEDFVAGLGWEVDLSTHCG---FMGGL-QRNGSTGQT 894 svYttykdmeimFHVSTlLPytesdkqqLqrKRHIGNDiVtIVFqesGek + Y e++FHVST +P +sd ++ RH+GND V IV+ e KIAA1272 895 APYYATSTVEVIFHVSTRMPS-DSDDSLTKKLRHLGNDEVHIVWSEHSR- 942 pFspdtIrShFqhVfviVraldpetehvtYkVsvtrrkDvpafgp<-* ++ + I F V +i+ ++ +++t + vp+fgp KIAA1272 943 DYRRGIIPTAFGDVSIIIYPMKNHMF----FIAITKKPEVPFFGP 983 PF02145.6.ls: domain 1 of 1, from 852 to 1016: score 70.1, E = 6.4e-18 *->lysNeeaspaFdeFLtlLGqrvrLKdfepDkvYrGGLDvkgddTGth ++sNe +s a+++F +LG v L + + + GGL +++++TG++ KIAA1272 852 ILSNERGSQAYEDFVAGLGWEVDLSTHCG---FMGGL-QRNGSTGQT 894 svYttykdmeimFHVSTlLPytesdkqqLqrKRHIGNDiVtIVFqesGek + Y e++FHVST +P +sd ++ RH+GND V IV+ e KIAA1272 895 APYYATSTVEVIFHVSTRMPS-DSDDSLTKKLRHLGNDEVHIVWSEHSR- 942 pFspdtIrShFqhVfviVraldpetehvtYkVsvtrrkDvpafgptlpkg ++ + I F V +i+ ++ +++t + vp+fgp KIAA1272 943 DYRRGIIPTAFGDVSIIIYPMKNHMF----FIAITKKPEVPFFGPLFDGA 988 avfdknaeFreflLakliNaenavhkarkFaklatrtRqklLadL<-* +v+ k ++ a iNa av k L L KIAA1272 989 IVSGKLLP--SLVCATCINASRAV---------------KCLIPL 1016 //