# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk07611.fasta.huge -Q ../query/KIAA1272.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1272, 1023 aa vs ./tmplib.24314 library 1986482 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 4.8955+/-0.00459; mu= 16.7563+/- 0.312 mean_var=77.8839+/-18.111, 0's: 0 Z-trim: 6 B-trim: 0 in 0/40 Lambda= 0.145328 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0474 ( 782 res) fj12051 ( 782) 286 70.1 1.3e-12 KIAA0545 ( 1368 res) hh00165s1 (1368) 254 63.6 2.1e-10 KIAA0440 ( 1817 res) ah05029 (1817) 251 63.1 3.9e-10 KIAA1389 ( 1514 res) hh03860 (1514) 238 60.3 2.3e-09 KIAA1039 ( 444 res) fh02337 ( 444) 228 57.7 4.1e-09 >>KIAA0474 ( 782 res) fj12051 (782 aa) initn: 235 init1: 84 opt: 286 Z-score: 318.1 bits: 70.1 E(): 1.3e-12 Smith-Waterman score: 286; 28.500% identity (60.500% similar) in 200 aa overlap (818-1009:277-476) 790 800 810 820 830 840 KIAA12 PFYFCRLLLDDLGMNSWDRRKNFHLLKKNSKLLRELKNLDSRQCRETHKIAVFYIAEGQE : : . ..: . .. :..:.: :: KIAA04 CLTEFPNVVQMAKLVCEDVNVDRFYPVLYPKASRLIVTFDEHVISNNFKFGVIYQKLGQT 250 260 270 280 290 300 850 860 870 880 890 900 KIAA12 DKCSILSNERGSQAYEDFVAGLGWEVDLSTHCGFMGGLQ-RNGSTGQTAPYYATSTVEVI .. ..:... : :. .:. :: .: :. :: :::. .:.:: . : . :.. KIAA04 SEEELFSTNEESPAFVEFLEFLGQKVKLQDFKGFRGGLDVTHGQTGTESVYCNFRNKEIM 310 320 330 340 350 360 910 920 930 940 950 960 KIAA12 FHVSTRMP-SDSDDSLTKKLRHLGNDEVHIVWSEHSRDYRRGIIPTAFGDVSIIIYPM-- :::::..: ...: . .. ::.::: : .:..... . .: . : . ... KIAA04 FHVSTKLPYTEGDAQQLQRKRHIGNDIVAVVFQDENTPFVPDMIASNFLHAYVVVQAEGG 370 380 390 400 410 420 970 980 990 1000 1010 KIAA12 --KNHMFFIAITKKPEVPFFGP-LFDGAIV-SGKLLPSLVCATCINASRAVKCLIPLYQS . .. ...: . .:::::: : : :. .: . .. . ::: : KIAA04 GPDGPLYKVSVTARDDVPFFGPPLPDPAVFRKGPEFQEFLLTKLINAEYACYKAEKFAKL 430 440 450 460 470 480 1020 KIAA12 PRVR KIAA04 EERTRAALLETLYEELHIHSQSMMGLGGDEDKMENGSGGGGFFESFKRVIRSRSQSMDAM 490 500 510 520 530 540 >>KIAA0545 ( 1368 res) hh00165s1 (1368 aa) initn: 192 init1: 95 opt: 254 Z-score: 278.8 bits: 63.6 E(): 2.1e-10 Smith-Waterman score: 256; 28.837% identity (60.930% similar) in 215 aa overlap (809-1009:181-393) 780 790 800 810 820 830 KIAA12 QPSPVEPRGPFYFCRLLLDDLGMNSWDRRKNFHLLK---KNSKLLRELKNLDSRQ-CRET :.: :. .. :. ..: .:: . ::. KIAA05 LEDATPTATKHGTGRGLPLKDALEYVIPELNIHCLRLALNTPKVTEQLLKLDEQGLCRK- 160 170 180 190 200 840 850 860 870 880 890 KIAA12 HKIAVFYIAEGQEDKCSILSNERGSQAYEDFVAGLGWEVDLSTHCGFMGGLQ-RNGSTGQ ::....: :: .. . .::... :.:.:.. .: .: :. . . :. .. ::: KIAA05 HKVGILYCKAGQSSEEEMYNNEEAGPAFEEFLSLIGEKVCLKGFTKYAAQLDVKTDSTGT 210 220 230 240 250 260 900 910 920 930 940 950 KIAA12 TAPYYATSTVEVIFHVSTRMPSDSDD--SLTKKLRHLGNDEVHIVWSEHSR-DYRRGIIP . : . :..::::: .: .. .: .: ::.::: : :...: . . : KIAA05 HSLYTMYQDYEIMFHVSTLLPYTPNNRQQLLRK-RHIGNDIVTIIFQEPGALPFTPKNIR 270 280 290 300 310 320 960 970 980 990 1000 KIAA12 TAFGDVSIIIY---PMKNHMFF-IAITKKPEVPFFGPLFDGAIVSGK--LLPSLVCATCI . : : ::. : ... . .:.:.. ..: ::: . .. . : .. ... : : KIAA05 SHFQHVFIIVRVHNPCTDNVCYSMAVTRSKDAPPFGPPIPSGTTFRKSDVFRDFLLAKVI 330 340 350 360 370 380 1010 1020 KIAA12 NASRAVKCLIPLYQSPRVR :: : KIAA05 NAENAAHKSDKFHTMATRTRQEYLKDLAENCVSNTPIDSTGKFNLISLTSKKKEKTKARA 390 400 410 420 430 440 >>KIAA0440 ( 1817 res) ah05029 (1817 aa) initn: 175 init1: 70 opt: 251 Z-score: 273.8 bits: 63.1 E(): 3.9e-10 Smith-Waterman score: 251; 28.713% identity (59.901% similar) in 202 aa overlap (818-1009:608-808) 790 800 810 820 830 840 KIAA12 PFYFCRLLLDDLGMNSWDRRKNFHLLKKNSKLLRELKNLDSRQCRETHKIAVFYIAEGQE :. ..: .:: . .:....: :: KIAA04 TARGLPLKEVLEHVVPELNVQCLRLAFNTPKVTEQLMKLDEQGLNYQQKVGIMYCKAGQS 580 590 600 610 620 630 850 860 870 880 890 900 KIAA12 DKCSILSNERGSQAYEDFVAGLGWEVDLSTHCGFMGGLQ-RNGSTGQTAPYYATSTVEVI . . .:: .. :.:.:. :: .: :. . . :. .. ::: . : . . :.. KIAA04 TEEEMYNNESAGPAFEEFLQLLGERVRLKGFEKYRAQLDTKTDSTGTHSLYTTYKDYEIM 640 650 660 670 680 690 910 920 930 940 950 960 KIAA12 FHVSTRMP--SDSDDSLTKKLRHLGNDEVHIVWSEH-SRDYRRGIIPTAFGDVSIIIY-- ::::: .: .. ..: .: ::.::: : ::..: .. . : . : : .:. KIAA04 FHVSTMLPYTPNNKQQLLRK-RHIGNDIVTIVFQEPGAQPFSPKNIRSHFQHVFVIVRVH 700 710 720 730 740 750 970 980 990 1000 1010 KIAA12 -PMKNHMFF-IAITKKPEVPFFGPLFDGAIVSGK--LLPSLVCATCINASRAVKCLIPLY : .. . . .:.:.. .:: ::: . ... : .. ... : ::: : KIAA04 NPCSDSVCYSVAVTRSRDVPSFGPPIPKGVTFPKSNVFRDFLLAKVINAENAAHKSEKFR 760 770 780 790 800 810 1020 KIAA12 QSPRVR KIAA04 AMATRTRQEYLKDLAEKNVTNTPIDPSGKFPFISLASKKKEKSKPYPGAELSSMGAIVWA 820 830 840 850 860 870 >>KIAA1389 ( 1514 res) hh03860 (1514 aa) initn: 247 init1: 113 opt: 238 Z-score: 260.1 bits: 60.3 E(): 2.3e-09 Smith-Waterman score: 244; 29.208% identity (58.911% similar) in 202 aa overlap (818-1009:382-582) 790 800 810 820 830 840 KIAA12 PFYFCRLLLDDLGMNSWDRRKNFHLLKKNSKLLRELKNLDSRQCRETHKIAVFYIAEGQE :. ..: .:: . :::...: :: KIAA13 TARGLPLKEVLEYVIPELSIQCLRQASNSPKVSEQLLKLDEQGLSFQHKIGILYCKAGQS 360 370 380 390 400 410 850 860 870 880 890 900 KIAA12 DKCSILSNERGSQAYEDFVAGLGWEVDLSTHCGFMGGLQ-RNGSTGQTAPYYATSTVEVI . . .:: .. :.:.:. :: .: :. . . :. .. ::: . : . . :.. KIAA13 TEEEMYNNETAGPAFEEFLDLLGQRVRLKGFSKYRAQLDNKTDSTGTHSLYTTYKDYELM 420 430 440 450 460 470 910 920 930 940 950 960 KIAA12 FHVSTRMP--SDSDDSLTKKLRHLGNDEVHIVWSEHSR-DYRRGIIPTAFGDVSIIIY-- ::::: .: .. ..: .: ::.::: : ::..: . . : . : : .:. KIAA13 FHVSTLLPYMPNNRQQLLRK-RHIGNDIVTIVFQEPGALPFTPKSIRSHFQHVFVIVKVH 480 490 500 510 520 530 970 980 990 1000 1010 KIAA12 -P-MKNHMFFIAITKKPEVPFFGPLFDGAIVSGK--LLPSLVCATCINASRAVKCLIPLY : .: . ...... .:: ::: . ... : .. ... : ::: : KIAA13 NPCTENVCYSVGVSRSKDVPPFGPPIPKGVTFPKSAVFRDFLLAKVINAENAAHKSEKFR 540 550 560 570 580 590 1020 KIAA12 QSPRVR KIAA13 AMATRTRQEYLKDLAENFVTTATVDTSVKFSFITLGAKKKEKVKPRKDAHLFSIGAIMWH 600 610 620 630 640 650 >>KIAA1039 ( 444 res) fh02337 (444 aa) initn: 186 init1: 67 opt: 228 Z-score: 255.6 bits: 57.7 E(): 4.1e-09 Smith-Waterman score: 228; 31.250% identity (62.500% similar) in 128 aa overlap (862-983:1-128) 840 850 860 870 880 890 KIAA12 RETHKIAVFYIAEGQEDKCSILSNERGSQAYEDFVAGLGWEVDLSTHCGFMGGLQ-RNGS ...:. :: . :. :: :::. .:. KIAA10 FKEFLDLLGDTITLQDFKGFRGGLDVTHGQ 10 20 30 900 910 920 930 940 KIAA12 TGQTAPYYATSTVEVIFHVSTRMP-SDSDDSLTKKLRHLGNDEVHIVWSEHSRDYRRGII :: . : . :..:::::..: .:.: . .. ::.::: : :...:.. . .: KIAA10 TGVESVYTTFRDREIMFHVSTKLPFTDGDAQQLQRKRHIGNDIVAIIFQEENTPFVPDMI 40 50 60 70 80 90 950 960 970 980 990 1000 KIAA12 PTAFGDVSIIIY---P-MKNHMFFIAITKKPEVPFFGPLFDGAIVSGKLLPSLVCATCIN . : . :.. : .. . ...: . .:: ::: KIAA10 ASNFLHAYIVVQVETPGTETPSYKVSVTAREDVPTFGPPLPSPPVFQKGPEFREFLLTKL 100 110 120 130 140 150 1010 1020 KIAA12 ASRAVKCLIPLYQSPRVR KIAA10 TNAENACCKSDKFAKLEDRTRAALLDNLHDELHAHTQAMLGLGPEEDKFENGGHGGFLES 160 170 180 190 200 210 1023 residues in 1 query sequences 1986482 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:15:39 2008 done: Thu Dec 18 15:15:39 2008 Total Scan time: 0.680 Total Display time: 0.130 Function used was FASTA [version 34.26.5 April 26, 2007]