hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/TIGRFAMs_HMM.LIB.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-22082884/chunk_1/iprscan-20080501-22082884.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1270 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- TIGR00344 alaS: alanyl-tRNA synthetase 656.0 1e-194 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- TIGR00344 1/1 42 966 .. 1 914 [] 656.0 1e-194 Alignments of top-scoring domains: TIGR00344: domain 1 of 1, from 42 to 966: score 656.0, E = 1e-194 *->evrqtfldffkek.ghevlpsaplvprrwdptllltnagvatfkpyf vr +fl+ff++++gh +psa++ pr dp+ll++nag+++fkp+f KIAA1270 42 AVRAAFLNFFRDRhGHRLVPSASVRPR-GDPSLLFVNAGMNQFKPIF 87 lggvvpppdfy.aprltnaqpcirlGGkhndlenvGrtgrhhtlfemlGn lg+v+p +++ ++ r++n+q+c+r+GG hndle+vGr+ hht+femlGn KIAA1270 88 LGTVDPRSEMAgFRRVANSQKCVRAGGHHNDLEDVGRDLSHHTFFEMLGN 137 fsfgyeddedyfkeeaiafawelltselglglpkerlyvtvyeedd.... ++fg +yfkeea + awellt +++g+p+erl+++++++d + + KIAA1270 138 WAFG----GEYFKEEACNMAWELLT--QVYGIPEERLWISYFDGDPkagl 181 ....eayelWekgggagPceriirggdelGPyaadnfwdlgdtgPcGpct +++ e++++W g +P++r++ g +nfw++gdtgPcGpct KIAA1270 182 dpdlETRDIWLSLG--VPASRVLSFGP------QENFWEMGDTGPCGPCT 223 eiyydrgekigdtgygpeklfwesgepdryleiwnlvfsqfnrdgdgndl ei+yd +++g p +e+wnlvf+q nr++dg+ l KIAA1270 224 EIHYDLAGGVG--------------APQ-LVELWNLVFMQHNREADGS-L 257 tplpkknidtgaglerlvavlqgdvpnnfdtdlflpliesveeltgltyp plp++++dtg+glerlvavlq ++ + +dtdlf pl+ ++++ +++ ++ KIAA1270 258 QPLPQRHVDTGMGLERLVAVLQ-GKHSTYDTDLFSPLLNAIQQGCRAPPY 306 senyktfdkdgadtslrviadhtralaflladGvlpsPnegrgyvlrrll ++ ++ d dt++rv+adh+r+l+ ++dGv p+ g vlrr+l KIAA1270 307 LGRVGVADEGRTDTAYRVVADHIRTLSVCISDGVFPG-MSGPPLVLRRIL 355 rralrhgkllglkepfnflyklvptlievlgdlypelkekqelveeilel rra+r+ ++ +p+ fl lvp+++e lgd+ypel++ +++++++ + KIAA1270 356 RRAVRFSMEILKAPPG-FLGSLVPVVVETLGDAYPELQRNSAQIANLVSE 404 eeerfaktlerGlrllekllkklkkdgnkeldgedafklydtyGfPvelt +e++f+ +lerG+r+++++l+ l ++ + + + l G+P++++ KIAA1270 405 DEAAFLASLERGRRIIDRTLRTLGPSDMFPAEVAWSLSLCGDLGLPLDMV 454 eelaeekgltvdwpgfeyaleeqrers.kaakktlgdlfeedleal.... e ++eekg+++d g e++ +e+ ++ ++a+ + + d++al++ + KIAA1270 455 ELMLEEKGVQLDSAGLERLAQEEAQHRaRQAEPVQKQGLWLDVHALgelq 504 ...........anvypateflgyddpellakvlglldgdgklveeanpgq +++ +++++++ +y+ y+ +++a vl l+ +dg +v ++ gq KIAA1270 505 rqgvpptddspKYNYSLRPSGSYEFGTCEAQVLQLYTEDGTAVASVGKGQ 554 sggvildrtpfyaesGGqigdtGylngdng..akfrvedvqkfkggvvlh g++ldrt fyae+GGq +d+Gyl+ + ++ f v +q+ gg++lh KIAA1270 555 RCGLLLDRTNFYAEQGGQASDRGYLVRAGQedVLFPVARAQVC-GGFILH 603 fgellegslkvGdkvtavvdekrrlrlkrnhtathllhaalkkvlgphvw + e +l++Gd+v++ vde++rl+ + htathll+ al+++lgp+ KIAA1270 604 EAVAPE-CLRLGDQVQLHVDEAWRLGCMAKHTATHLLNWALRQTLGPGTE 652 qaGslvsakklrfdfshpraltkeeleevedlvneqilanlpvkvefldl q Gs ++++lr+d++ lt+e+l+ ve+ v e + ++ v e ++l KIAA1270 653 QQGSHLNPEQLRLDVTTQTPLTPEQLRAVENTVQEAVGQDEAVYMEEVPL 702 deakakgalalfgegygpgekvrvvsvgdpngel..........ysvelc ++ + +l+ e y+ ++vrvvsvg p+ + ++ ++ + svelc KIAA1270 703 ALTAQVPGLRSLDEVYP--DPVRVVSVGVPVAHAldpasqaalqTSVELC 750 GGthventgdiglfkilkesgigaGvrrieavtgneaaleylneeedllk Gth+ +tg +g++ i+ + +++G+ r+ avtg e a ++++ ++l++ KIAA1270 751 CGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAVTG-EQAQQARELGQSLAQ 799 eaadllkvdpnelpkkverlfeewkelrkeleklkeklaplkstelleka e++ + ++ v + k++ + +e+++ ++ p++ + l + KIAA1270 800 EVKAATER-LSLGSRDVAEALRLSKDIGRLIEAVETAVMPQWQRRELLAT 848 etldglkvlvee.........................lktvdakpnlktl ++ + + ++ + ++ +++++ +++++++ ++tv a++ l l KIAA1270 849 VKMLQRRANTAIrklqmgqaakktqellerhskgpliVDTVSAES-LSVL 897 ldklkeklgslvdkdkavllallndgkgkllagvsedlvkakglkagell ++ +++ +++ + +vll+ + + gk+l+++ + a +++ KIAA1270 898 VKVVRQLCEQAP--STSVLLLSPQP-MGKVLCACQVAQGAMPTFTAEAWA 944 nevaevpsflilgggggciegrpdlaqggg<-* v + +gg++ g +aqg g KIAA1270 945 LAVCS-----HMGGKAW---GSRVVAQGTG 966 //