hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-22082884/chunk_1/iprscan-20080501-22082884.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1270 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01411.9.ls tRNA synthetases class II (A) 832.1 2.6e-247 1 PF01411.9.fs tRNA synthetases class II (A) 830.3 9.6e-247 1 PF07973.4.ls Threonyl and Alanyl tRNA synthetase seco 40.8 4.4e-09 1 PF07973.4.fs Threonyl and Alanyl tRNA synthetase seco 38.9 5.6e-09 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01411.9.fs 1/1 42 625 .. 1 613 [] 830.3 9.6e-247 PF01411.9.ls 1/1 42 625 .. 1 613 [] 832.1 2.6e-247 PF07973.4.fs 1/1 722 780 .. 1 60 [] 38.9 5.6e-09 PF07973.4.ls 1/1 722 780 .. 1 60 [] 40.8 4.4e-09 Alignments of top-scoring domains: PF01411.9.fs: domain 1 of 1, from 42 to 625: score 830.3, E = 9.6e-247 *->EIRqtFLdFFe.kkGHtvvpSsplvPrRnDPtLLFtNAGMnqFKpiF +R FL+FF++++GH vpS+++ Pr DP+LLF+NAGMnqFKpiF KIAA1270 42 AVRAAFLNFFRdRHGHRLVPSASVRPR-GDPSLLFVNAGMNQFKPIF 87 lGgedPnsdkppynRAtnsQkCIRaGGKHNDLENVGkTaRHHTFFEMLGN lG++dP s+++ ++R++nsQkC+RaGG HNDLE+VG++ HHTFFEMLGN KIAA1270 88 LGTVDPRSEMAGFRRVANSQKCVRAGGHHNDLEDVGRDLSHHTFFEMLGN 137 FSFGyedkeDYFKeEAIefAWELLTSkvlgLpperLyvTVyedDdkaGLe ++FG YFKeEA+ +AWELLT +v+g+p erL+++++ +D kaGL KIAA1270 138 WAFG----GEYFKEEACNMAWELLT-QVYGIPEERLWISYFDGDPKAGLD 182 PdgEAypiWekivGipeeRIlrfgdkDNFWemGDtdIKGkGPCGPCSEIf Pd+E+++iW+ ++ +p++R+l fg NFWemGDt GPCGPC+EI+ KIAA1270 183 PDLETRDIWLSLG-VPASRVLSFGPQENFWEMGDT-----GPCGPCTEIH 226 YDRGeeiggrpagspveFgDadddrflEIWNLVFmQfNReskeDdGtlkp YD gg + + ++E WNLVFmQ NRe+ dG+l p KIAA1270 227 YDL---AGG---VGAPQ--------LVELWNLVFMQHNREA---DGSLQP 259 LPkksiDTGMGLERlvaVLQnvrsNYdtDlFrplIeaieeisgvRYDpYs LP+ ++DTGMGLERlvaVLQ+++s YdtDlF pl +ai++ + + pY KIAA1270 260 LPQRHVDTGMGLERLVAVLQGKHSTYDTDLFSPLLNAIQQGCRAP--PYL 307 GkvGdedkdetdeayRVIADHvRalaFaiADGvlPsNeGRGYVLRRILRR G vG+ d+++td+ayRV+ADH+R+l+ i+DGv P+ G VLRRILRR KIAA1270 308 GRVGVADEGRTDTAYRVVADHIRTLSVCISDGVFPGMSGPPLVLRRILRR 357 AvRhgrkkLGlkepNFlykLVptvveimgdaYPELkekedfieeilelEE AvR+ + L ++++ Fl++LVp+vve +gdaYPEL+++ +i + + + E KIAA1270 358 AVRFSMEILKAPPG-FLGSLVPVVVETLGDAYPELQRNSAQIANLVSEDE 406 erFlkTLerGlrLleelikslkkkGsktLsGedaFkLYDT..YGFPvDLT ++Fl LerG+r+ ++++ l + s+ ++ e+a+ L ++ G+P+D++ KIAA1270 407 AAFLASLERGRRIIDRTLRTLGP--SDMFPAEVAWSLSLCgdLGLPLDMV 454 qeiAeerGltVDmegFekamee.qrerskqakkgkgedlieldvsalkel ++++ee+G + D g e + +e++++r++qa + + ldv+al el KIAA1270 455 ELMLEEKGVQLDSAGLERLAQEeAQHRARQAEPVQKQ-GLWLDVHALGEL 503 datgvpgTteFlgYdtls.d.da.y.feeaeakilalfk.dgefveevla + gvp T+++++Y++ s ++++y+f +ea++l l+ +dg v++v KIAA1270 504 QRQGVPPTDDSPKYNY-SlRpSGsYeFGTCEAQVLQLYTeDGTAVASVGK 552 gqeggvvLDrTpFYAEsGGQigDtGylvyIngeg...gefrVedvqkygg gq +g++LDrT+FYAE+GGQ D+G y+ +g+++++f V +q+ g KIAA1270 553 GQRCGLLLDRTNFYAEQGGQASDRG---YLVRAGqedVLFPVARAQVCG- 598 gvvvHigkveeGslkvGdtVtavvDedr<-* g+++H +l Gd+V+++vDe++ KIAA1270 599 GFILHEAVAP-ECLRLGDQVQLHVDEAW 625 PF01411.9.ls: domain 1 of 1, from 42 to 625: score 832.1, E = 2.6e-247 *->EIRqtFLdFFe.kkGHtvvpSsplvPrRnDPtLLFtNAGMnqFKpiF +R FL+FF++++GH vpS+++ Pr DP+LLF+NAGMnqFKpiF KIAA1270 42 AVRAAFLNFFRdRHGHRLVPSASVRPR-GDPSLLFVNAGMNQFKPIF 87 lGgedPnsdkppynRAtnsQkCIRaGGKHNDLENVGkTaRHHTFFEMLGN lG++dP s+++ ++R++nsQkC+RaGG HNDLE+VG++ HHTFFEMLGN KIAA1270 88 LGTVDPRSEMAGFRRVANSQKCVRAGGHHNDLEDVGRDLSHHTFFEMLGN 137 FSFGyedkeDYFKeEAIefAWELLTSkvlgLpperLyvTVyedDdkaGLe ++FG YFKeEA+ +AWELLT +v+g+p erL+++++ +D kaGL KIAA1270 138 WAFG----GEYFKEEACNMAWELLT-QVYGIPEERLWISYFDGDPKAGLD 182 PdgEAypiWekivGipeeRIlrfgdkDNFWemGDtdIKGkGPCGPCSEIf Pd+E+++iW+ ++ +p++R+l fg NFWemGDt GPCGPC+EI+ KIAA1270 183 PDLETRDIWLSLG-VPASRVLSFGPQENFWEMGDT-----GPCGPCTEIH 226 YDRGeeiggrpagspveFgDadddrflEIWNLVFmQfNReskeDdGtlkp YD gg + + ++E WNLVFmQ NRe+ dG+l p KIAA1270 227 YDL---AGG---VGAPQ--------LVELWNLVFMQHNREA---DGSLQP 259 LPkksiDTGMGLERlvaVLQnvrsNYdtDlFrplIeaieeisgvRYDpYs LP+ ++DTGMGLERlvaVLQ+++s YdtDlF pl +ai++ + + pY KIAA1270 260 LPQRHVDTGMGLERLVAVLQGKHSTYDTDLFSPLLNAIQQGCRAP--PYL 307 GkvGdedkdetdeayRVIADHvRalaFaiADGvlPsNeGRGYVLRRILRR G vG+ d+++td+ayRV+ADH+R+l+ i+DGv P+ G VLRRILRR KIAA1270 308 GRVGVADEGRTDTAYRVVADHIRTLSVCISDGVFPGMSGPPLVLRRILRR 357 AvRhgrkkLGlkepNFlykLVptvveimgdaYPELkekedfieeilelEE AvR+ + L ++++ Fl++LVp+vve +gdaYPEL+++ +i + + + E KIAA1270 358 AVRFSMEILKAPPG-FLGSLVPVVVETLGDAYPELQRNSAQIANLVSEDE 406 erFlkTLerGlrLleelikslkkkGsktLsGedaFkLYDT..YGFPvDLT ++Fl LerG+r+ ++++ l + s+ ++ e+a+ L ++ G+P+D++ KIAA1270 407 AAFLASLERGRRIIDRTLRTLGP--SDMFPAEVAWSLSLCgdLGLPLDMV 454 qeiAeerGltVDmegFekamee.qrerskqakkgkgedlieldvsalkel ++++ee+G + D g e + +e++++r++qa + + ldv+al el KIAA1270 455 ELMLEEKGVQLDSAGLERLAQEeAQHRARQAEPVQKQ-GLWLDVHALGEL 503 datgvpgTteFlgYdtls.d.da.y.feeaeakilalfk.dgefveevla + gvp T+++++Y++ s ++++y+f +ea++l l+ +dg v++v KIAA1270 504 QRQGVPPTDDSPKYNY-SlRpSGsYeFGTCEAQVLQLYTeDGTAVASVGK 552 gqeggvvLDrTpFYAEsGGQigDtGylvyIngeg...gefrVedvqkygg gq +g++LDrT+FYAE+GGQ D+G y+ +g+++++f V +q+ g KIAA1270 553 GQRCGLLLDRTNFYAEQGGQASDRG---YLVRAGqedVLFPVARAQVCG- 598 gvvvHigkveeGslkvGdtVtavvDedr<-* g+++H +l Gd+V+++vDe++ KIAA1270 599 GFILHEAVAP-ECLRLGDQVQLHVDEAW 625 PF07973.4.fs: domain 1 of 1, from 722 to 780: score 38.9, E = 5.6e-09 *->vRvvsiGd.ll.npknkefsv...S.eLCgGTHVpnTgeIgaFKIls vRvvs+G ++ ++++ ++ ++S eLC+GTH+ +Tg +g+ +I+ KIAA1270 722 VRVVSVGVpVAhALDPASQAAlqtSvELCCGTHLLRTGAVGDLVII- 767 vAGAYWsgesknkglrRIy<-* + +kg++R+ KIAA1270 768 ------GDRQLSKGTTRLL 780 PF07973.4.ls: domain 1 of 1, from 722 to 780: score 40.8, E = 4.4e-09 *->vRvvsiGd.ll.npknkefsv...S.eLCgGTHVpnTgeIgaFKIls vRvvs+G ++ ++++ ++ ++S eLC+GTH+ +Tg +g+ +I+ KIAA1270 722 VRVVSVGVpVAhALDPASQAAlqtSvELCCGTHLLRTGAVGDLVII- 767 vAGAYWsgesknkglrRIy<-* + +kg++R+ KIAA1270 768 ------GDRQLSKGTTRLL 780 //