hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-22050971/chunk_1/iprscan-20080501-22050971.nocrc
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Query sequence: KIAA1268
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00506                                                 445.0   3.8e-129   3

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00506     1/3     146   280 ..     1   156 []   189.1    4e-52
SM00506     2/3     358   491 ..     1   156 []   132.2  5.7e-35
SM00506     3/3     571   690 ..     1   156 []   123.7    2e-32

Alignments of top-scoring domains:
SM00506: domain 1 of 3, from 146 to 280: score 189.1, E = 4e-52
                   *->ilkvvkGDItklradaIVNAANsrllhGgGgvagAiaraaggpcwee
                       l+v +GD+++l++d++VNA+N++l+h gG +a+A+++aag p++++
    KIAA1268   146    VLIVQQGDLARLPVDVVVNASNEDLKHYGG-LAAALSKAAG-PELQA 190  

                   ekeefrkqaggepLqlgecpvGtavvteggnlpentkrgkakyVIHavGP
                   +++ ++k++g+         +G+a+++++g+l       ++++VIHavGP
    KIAA1268   191 DCDQIVKREGR-------LLPGNATISKAGKL-------PYHHVIHAVGP 226  

                   easgynnkkgseegdellenAyranclrlaeelgiksvaiPlIstGiygv
                   ++sgy++    +++  ll++A+++ +l+lae+ +++s+aiP+Is+G++g+
    KIAA1268   227 RWSGYEA----PRCVYLLRRAVQL-SLCLAEKYKYRSIAIPAISSGVFGF 271  

                   pkdrvaqal<-*
                   p++r+++++   
    KIAA1268   272 PLGRCVETI    280  

SM00506: domain 2 of 3, from 358 to 491: score 132.2, E = 5.7e-35
                   *->ilkvvkGDItklradaIVNAANsrllhGgGgvagAiaraaggpcwee
                       + +vk  + ++++d++VN++  +l++ +G++++ + ++ag    +e
    KIAA1268   358    QMLLVKEGVQNAKTDVVVNSVPLDLVLSRGPLSKSLLEKAG----PE 400  

                   ekeefrkqaggepLqlgecpvGtavvteggnlpentkrgkakyVIHavGP
                   ++ee++++ +g++     + +Gt+  t+++nl       +++yV H+v+P
    KIAA1268   401 LQEELDTVGQGVA-----VSMGTVLKTSSWNL-------DCRYVLHVVAP 438  

                   easgynnkkgseegdellenAyranclrlaeelgiksvaiPlIstGiygv
                   e++     +gs ++++++e  +r+ c++++e l +ks+a+P+I+tG+ g+
    KIAA1268   439 EWR-----NGSTSSLKIMEDIIRE-CMEITESLSLKSIAFPAIGTGNLGF 482  

                   pkdrvaqal<-*
                   pk+++a+++   
    KIAA1268   483 PKNIFAELI    491  

SM00506: domain 3 of 3, from 571 to 690: score 123.7, E = 2e-32
                   *->ilkvvkGDItklradaIVNAANsrllhGgGgvagAiaraaggpcwee
                      i++v +GDItk +ad+IVN++ + + +++G v++Ai ++ag    ++
    KIAA1268   571    IFQVASGDITKEEADVIVNSTSNSFNLKAG-VSKAILECAG----QN 612  

                   ekeefrkqaggepLqlgecpvGtavvteggnlpentkrgkakyVIHavGP
                    ++e+ +qa+        ++  ++++t gg+l       ++k++IH++G 
    KIAA1268   613 VERECSQQAQ--------QRKNDYIITGGGFL-------RCKNIIHVIGG 647  

                   easgynnkkgseegdellenAyranclrlaeelgiksvaiPlIstGiygv
                   +             ++++ +++++     +e++++ s+++P+I+tG+++ 
    KIAA1268   648 NDV-----------KSSVSSVLQE-----CEKKNYSSICLPAIGTGNAKQ 681  

                   pkdrvaqal<-*
                   ++d va+a+   
    KIAA1268   682 HPDKVAEAI    690  

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