# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hj04493.fasta.huge -Q ../query/KIAA1265.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1265, 835 aa vs ./tmplib.24314 library 1986670 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 4.8323+/-0.00512; mu= 17.8175+/- 0.348 mean_var=123.4245+/-28.805, 0's: 0 Z-trim: 3 B-trim: 0 in 0/40 Lambda= 0.115445 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0062 ( 531 res) ha01020 ( 531) 563 105.3 1.8e-23 >>KIAA0062 ( 531 res) ha01020 (531 aa) initn: 818 init1: 334 opt: 563 Z-score: 513.4 bits: 105.3 E(): 1.8e-23 Smith-Waterman score: 736; 31.161% identity (61.711% similar) in 491 aa overlap (341-829:130-528) 320 330 340 350 360 370 KIAA12 HTRKREAPHVKNNAIISLRKDLNEDDHHHECLNVTQLLKYYGHGANSPISTDLFTYLCPA :.. .:. .. . .: :... . .::. KIAA00 QLKALLNHLDVGVGRGNVTQHVQGHRNLSTCFSSGDLFTAHNFSEQSRIGSSELQEFCPT 100 110 120 130 140 150 380 390 400 410 420 430 KIAA12 LLYQIDSRLCIEHFDKLLVEDINKDKNLVPEDEANIGASAWICGIISITVISLLSLLGVI .: :.::: : :. ....: :. .. .: :.. .::::: ::::. KIAA00 ILQQLDSRACTS-------ENQENEENEQTEEGRPSAVEVWGYGLLCVTVISLCSLLGAS 160 170 180 190 200 210 440 450 460 470 480 490 KIAA12 LVPIINQGCFKFLLTFLVALAVGTMSGDALLHLLPHSQGGHDHSHQHAHGHGHSHGHESN .::.... .: :: ...:::.::. ..::..:.:.. : . KIAA00 VVPFMKKTFYKRLLLYFIALAIGTLYSNALFQLIPEAFGFNP------------------ 220 230 240 250 500 510 520 530 540 550 KIAA12 KFLEEYDAVLKGLVALGGIYLLFIIEHCIRMFKHYKQQRGKQKWFMKQNTEESTIGRKLS ::.: : :. :..::.::.:. :. .... .::..:. . . KIAA00 --LEDY-YVSKSAVVFGGFYLFFFTEKILKIL-------------LKQKNEHHHGHSHYA 260 270 280 290 560 570 580 590 600 KIAA12 DHKLNNTPDSDWLQLKPLAGTD-DSVVSEDRLNETELTDLEGQQESPPKNYLCIEEEKII ...: . :.. .. : . : : .. . .: :.:. .: . .::.: KIAA00 SESLPSKKDQEEGVMEKLQNGDLDHMIPQHCSSE-----LDGK--AP------MVDEKVI 300 310 320 330 340 610 620 630 640 650 660 KIAA12 DHSHSDGLHTIHEHDLHAAAHNHHGENKTVLRKHNHQWHHKHSHHSHGPCHSGSDLKETG . .. .::.: :.. :. . .. . KIAA00 -------VGSLSVQDLQA---------------------------SQSACYWLKGVRYSD 350 360 370 670 680 690 700 710 720 KIAA12 IANIAWMVIMGDGIHNFSDGLAIGAAFSAGLTGGISTSIAVFCHELPHELGDFAVLLKAG :...:::. ..::.::: :::::::.:.... :::::.:..:.:.:::::::..::.:: KIAA00 IGTLAWMITLSDGLHNFIDGLAIGASFTVSVFQGISTSVAILCEEFPHELGDFVILLNAG 380 390 400 410 420 430 730 740 750 760 770 780 KIAA12 MTVKQAIVYNLLSAMMAYIGMLIGTAVG-QYANNITLWIFAVTAGMFLYVALVDMLPEML :...::. .:.::: :.:. .: .: ... : ::::...:::::..:.::.::: KIAA00 MSIQQALFFNFLSACCCYLGLAFGILAGSHFSAN---WIFALAGGMFLYISLADMFPEMN 440 450 460 470 480 790 800 810 820 830 KIAA12 HGDGDNEEHGFCPVGQFILQNLGLLFGFAIMLVIALYEDKIVFDIQF . ..:..: . ::.:::::: ::.::.:...: .: KIAA00 EVCQEDERKGSILI-PFIIQNLGLLTGFTIMVVLTMYSGQIQIG 490 500 510 520 530 835 residues in 1 query sequences 1986670 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:15:23 2008 done: Thu Dec 18 15:15:24 2008 Total Scan time: 0.600 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]