hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-21565830/chunk_1/iprscan-20080501-21565830.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1263 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00408 94.1 1.6e-23 2 SM00409 80.0 3e-19 2 SM00280 48.5 8.6e-10 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00280 1/1 91 136 .. 1 58 [] 48.5 8.6e-10 SM00409 1/2 258 343 .. 1 58 [] 36.1 4.8e-06 SM00408 1/2 264 331 .. 1 56 [] 34.6 1.4e-05 SM00409 2/2 350 434 .. 1 58 [] 43.9 2.2e-08 SM00408 2/2 356 423 .. 1 56 [] 59.6 4.1e-13 Alignments of top-scoring domains: SM00280: domain 1 of 1, from 91 to 136: score 48.5, E = 8.6e-10 *->dCseyrsptsggllaCpreydPVCGsDGvTYsNeCeLcaaaCeaeqg C C r+y+PVCGsDG Y N Ce + aaC ++ KIAA1263 91 ACMD----------LCKRHYKPVCGSDGEFYENHCEVHRAACL--KK 125 ksievkhdGpC<-* +i+++h+ C KIAA1263 126 QKITIVHNEDC 136 SM00409: domain 1 of 2, from 258 to 343: score 36.1, E = 4.8e-06 *->pp.vtvkeGesvtLtC.as.....titWy.................. + + + +G+s++L+C ++++ + i W++++ ++ + + ++ + KIAA1263 258 LSiTAATVGQSAVLSCaIQgtlrpPIIWKrnniilnnldledindfg 304 ....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* ++++L I++vt + G+YtC a + +++ + +++ V KIAA1263 305 ddgsLYItKVTTTHV---GNYTCYADgyEQVYQT-HIFQVNVP 343 SM00408: domain 1 of 2, from 264 to 331: score 34.6, E = 1.4e-05 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt Gqs++L C g p I W++++ l++ + ++ ++ +++++L KIAA1263 264 TVGQSAVLSCAIQGTLRPPIIWKRnNIILNnldledindfgDDGSLY 310 iknvsleDsGlYtCvArNsvg<-* i+ v+ + G+YtC+A + KIAA1263 311 ITKVTTTHVGNYTCYADGYEQ 331 SM00409: domain 2 of 2, from 350 to 434: score 43.9, E = 2.2e-08 *->pp.vtvkeGesvtLtC.as.....titWy.................. p+++ +G +++L+C+a++ +++++ W++++ + +++ +++ + + KIAA1263 350 PEsQAREPGVTASLRChAEgipkpQLGWLkngiditpklskqltlqa 396 ....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +++ +I+nv++eD+ G YtC a++ +g+++ L V+ KIAA1263 397 ngseVHIsNVRYEDT---GAYTCIAKneAGVDED--ISSLFVE 434 SM00408: domain 2 of 2, from 356 to 423: score 59.6, E = 4.1e-13 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt ++G +++L+C+a+g p p+ Wlk+g + ++ +++ + + +gs+++ KIAA1263 356 EPGVTASLRCHAEGIPKPQLGWLKnGIDITpklskqltlqaNGSEVH 402 iknvsleDsGlYtCvArNsvg<-* i+nv++eD G YtC+A N++g KIAA1263 403 ISNVRYEDTGAYTCIAKNEAG 423 //