hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-21565830/chunk_1/iprscan-20080501-21565830.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1263 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07679.6.fs Immunoglobulin I-set domain 88.8 2.6e-25 2 PF07679.6.ls Immunoglobulin I-set domain 83.7 5.3e-22 2 PF00047.15.ls Immunoglobulin domain 60.4 5.3e-15 2 PF00047.15.fs Immunoglobulin domain 56.6 8.7e-15 2 PF00050.11.fs Kazal-type serine protease inhibitor domain 44.0 3.6e-11 1 PF00050.11.ls Kazal-type serine protease inhibitor domain 45.7 1.4e-10 1 PF07648.6.fs Kazal-type serine protease inhibitor domain 41.1 5e-10 1 PF07648.6.ls Kazal-type serine protease inhibitor domain 42.9 1e-09 1 PF00036.22.fs EF hand 23.3 2.6e-05 1 PF00036.22.ls EF hand 25.3 0.0002 1 PF07686.7.ls Immunoglobulin V-set domain 14.7 0.0016 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07648.6.ls 1/1 91 136 .. 1 61 [] 42.9 1e-09 PF07648.6.fs 1/1 91 136 .. 1 61 [] 41.1 5e-10 PF00050.11.fs 1/1 92 136 .. 1 61 [] 44.0 3.6e-11 PF00050.11.ls 1/1 92 136 .. 1 61 [] 45.7 1.4e-10 PF00036.22.fs 1/1 182 210 .. 1 29 [] 23.3 2.6e-05 PF00036.22.ls 1/1 182 210 .. 1 29 [] 25.3 0.0002 PF07679.6.ls 1/2 253 342 .. 1 96 [] 13.9 7.6e-05 PF07679.6.fs 1/2 255 326 .. 4 81 .. 20.9 1.7e-05 PF00047.15.fs 1/2 266 326 .. 1 65 [] 23.0 1.5e-05 PF00047.15.ls 1/2 266 326 .. 1 65 [] 24.9 0.00026 PF07686.7.ls 1/1 343 434 .. 1 141 [] 14.7 0.0016 PF07679.6.ls 2/2 344 433 .. 1 96 [] 69.8 7.8e-18 PF07679.6.fs 2/2 344 433 .. 1 96 [] 67.9 3.3e-19 PF00047.15.fs 2/2 358 418 .. 1 65 [] 33.6 1.8e-08 PF00047.15.ls 2/2 358 418 .. 1 65 [] 35.5 1.7e-07 Alignments of top-scoring domains: PF07648.6.ls: domain 1 of 1, from 91 to 136: score 42.9, E = 1e-09 *->eCseyrsqvrNGlaCpreegydPVCGsDGckTYsNeCalgcanCkag C++ C +++ y+PVCGsDG Y N C+ +a+C+++ KIAA1263 91 ACMD---------LC-KRH-YKPVCGSDG-EFYENHCEVHRAACLKK 125 flegelrlkydGeC<-* ++++ +++ C KIAA1263 126 ---QKITIVHNEDC 136 PF07648.6.fs: domain 1 of 1, from 91 to 136: score 41.1, E = 5e-10 *->eCseyrsqvrNGlaCpreegydPVCGsDGckTYsNeCalgcanCkag C++ C +++ y+PVCGsDG Y N C+ +a+C+++ KIAA1263 91 ACMD---------LC-KRH-YKPVCGSDG-EFYENHCEVHRAACLKK 125 flegelrlkydGeC<-* ++++ +++ C KIAA1263 126 ---QKITIVHNEDC 136 PF00050.11.fs: domain 1 of 1, from 92 to 136: score 44.0, E = 3.6e-11 *->CsrypnptskDGklvaCpreydPVCGsDGvTYsNECeLkkaaCaenv C + C r+y+PVCGsDG Y N Ce ++aaC KIAA1263 92 CMDL------------CKRHYKPVCGSDGEFYENHCEVHRAAC---- 122 eqgtniekkhdGpC<-* ++++i+++h+ C KIAA1263 123 LKKQKITIVHNEDC 136 PF00050.11.ls: domain 1 of 1, from 92 to 136: score 45.7, E = 1.4e-10 *->CsrypnptskDGklvaCpreydPVCGsDGvTYsNECeLkkaaCaenv C + C r+y+PVCGsDG Y N Ce ++aaC KIAA1263 92 CMDL------------CKRHYKPVCGSDGEFYENHCEVHRAAC---- 122 eqgtniekkhdGpC<-* ++++i+++h+ C KIAA1263 123 LKKQKITIVHNEDC 136 PF00036.22.fs: domain 1 of 1, from 182 to 210: score 23.3, E = 2.6e-05 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* ++++Fk fD+D +G ++++E+ +++k+ KIAA1263 182 LVDQMFKYFDADSNGLVDINELTQVIKQE 210 PF00036.22.ls: domain 1 of 1, from 182 to 210: score 25.3, E = 0.0002 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* ++++Fk fD+D +G ++++E+ +++k+ KIAA1263 182 LVDQMFKYFDADSNGLVDINELTQVIKQE 210 PF07679.6.ls: domain 1 of 2, from 253 to 342: score 13.9, E = 7.6e-05 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvl.l P+ +qk++ +++G+sa+++C ++Gt P + W++++ l++ l+l KIAA1263 253 PE-DQKLSITAATVGQSAVLSCAIQGTLRPPIIWKRNNIILNN-LdL 297 psdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGe.aeasaeLt + g ++ +L I +v+ G YtC+A ++ ++++ KIAA1263 298 E----DINDFG--DDGSLYITKVTTTHVGNYTCYADGYEQVyQTHIFQVN 341 V<-* V KIAA1263 342 V 342 PF07679.6.fs: domain 1 of 2, from 255 to 326: score 20.9, E = 1.7e-05 *->tqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvl.lpsd +qk++ +++G+sa+++C ++Gt P + W++++ l++ l+l KIAA1263 255 DQKLSITAATVGQSAVLSCAIQGTLRPPIIWKRNNIILNN-LdLE-- 298 rfkvtydgGsgtytLtIsnvqpdDsGkYtCvA<-* + g ++ +L I +v+ G YtC+A KIAA1263 299 --DINDFG--DDGSLYITKVTTTHVGNYTCYA 326 PF00047.15.fs: domain 1 of 2, from 266 to 326: score 23.0, E = 1.5e-05 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+s+ L+C g+ + + W+rn+ l + +l ++ ++d++ KIAA1263 266 GQSAVLSCAI--QGTLRPPIIWKRNNIiLNnLDLEDINDFGDDGS-- 308 tsLtitnvtpeDggtYtCvv<-* L it+vt + g+YtC++ KIAA1263 309 --LYITKVTTTHVGNYTCYA 326 PF00047.15.ls: domain 1 of 2, from 266 to 326: score 24.9, E = 0.00026 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+s+ L+C g+ + + W+rn+ l + +l ++ ++d++ KIAA1263 266 GQSAVLSCAI--QGTLRPPIIWKRNNIiLNnLDLEDINDFGDDGS-- 308 tsLtitnvtpeDggtYtCvv<-* L it+vt + g+YtC++ KIAA1263 309 --LYITKVTTTHVGNYTCYA 326 PF07686.7.ls: domain 1 of 1, from 343 to 434: score 14.7, E = 0.0016 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss + ++ p+ s ++G +++L+C+ + KIAA1263 343 PPVIRV-YPE------------SQAREPGVTASLRCHAE----GI-- 370 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls + ++ W + +++++++ +++ tl+ KIAA1263 371 --PKPQLGWLK-----------------------NGIDITPKLSKQLTLQ 395 gnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* +n+s ++Isn++ +D+G Y+C +n+ +v + L V+ KIAA1263 396 ANGS----EVHISNVRYEDTGAYTCIAKNE-AGVDEDISSLFVE 434 PF07679.6.ls: domain 2 of 2, from 344 to 433: score 69.8, E = 7.8e-18 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P++ p+++ G +a++ C+++G P+P+ W+K+G ++++ KIAA1263 344 PVIRVYPESQAREPGVTASLRCHAEGIPKPQLGWLKNGIDITP--KL 388 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< s+ + ++g + Isnv +D G YtC+A+N+aG +e +L V KIAA1263 389 SKQLTLQANG----SEVHISNVRYEDTGAYTCIAKNEAGVDEDISSLFV 433 -* KIAA1263 - - PF07679.6.fs: domain 2 of 2, from 344 to 433: score 67.9, E = 3.3e-19 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P++ p+++ G +a++ C+++G P+P+ W+K+G ++++ KIAA1263 344 PVIRVYPESQAREPGVTASLRCHAEGIPKPQLGWLKNGIDITP--KL 388 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< s+ + ++g + Isnv +D G YtC+A+N+aG +e +L V KIAA1263 389 SKQLTLQANG----SEVHISNVRYEDTGAYTCIAKNEAGVDEDISSLFV 433 -* KIAA1263 - - PF00047.15.fs: domain 2 of 2, from 358 to 418: score 33.6, E = 1.8e-08 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G +++L+C++ +g p +++ Wl+ng ++t+ + + + ++s KIAA1263 358 GVTASLRCHA--EGIPKPQLGWLKNGIdITpKLSKQLTLQANGSE-- 400 tsLtitnvtpeDggtYtCvv<-* ++i+nv++eD+g YtC + KIAA1263 401 --VHISNVRYEDTGAYTCIA 418 PF00047.15.ls: domain 2 of 2, from 358 to 418: score 35.5, E = 1.7e-07 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G +++L+C++ +g p +++ Wl+ng ++t+ + + + ++s KIAA1263 358 GVTASLRCHA--EGIPKPQLGWLKNGIdITpKLSKQLTLQANGSE-- 400 tsLtitnvtpeDggtYtCvv<-* ++i+nv++eD+g YtC + KIAA1263 401 --VHISNVRYEDTGAYTCIA 418 //