hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21533741/chunk_1/iprscan-20080501-21533741.nocrc
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Query sequence: KIAA1261
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                 169.1    4.5e-46   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/7     491   528 ..     1    46 []    22.2    0.074
SM00320    2/7     534   575 ..     1    46 []    22.4    0.062
SM00320    3/7     580   619 ..     1    46 []    31.0  0.00017
SM00320    4/7     622   661 ..     1    46 []    44.0    2e-08
SM00320    5/7     664   702 ..     1    46 []     6.9       40
SM00320    6/7     704   743 ..     1    46 []    24.7    0.012
SM00320    7/7     744   784 ..     1    46 []    17.9     0.71

Alignments of top-scoring domains:
SM00320: domain 1 of 7, from 491 to 528: score 22.2, E = 0.074
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgsDgtirlWd
                        +++ tl+ H     V++v++s         +++++g+ g++++Wd
    KIAA1261   491    HaRQINTLN-HGE--VVCAVTISNPT------RHVYTGGKGCVKVWD 528  

                   <-*
                      
    KIAA1261     -     -    

SM00320: domain 2 of 7, from 534 to 575: score 22.4, E = 0.062
                   *->t.kllrtlk..gHtgespVtsvafspdggssdspnllasgs.Dgtir
                      ++++++ l+    ++  +++s++  pdg      + l++g++ +t+ 
    KIAA1261   534    NkSPVSQLDclNRDN--YIRSCRLLPDG------RTLIVGGeASTLS 572  

                   lWd<-*
                   +Wd   
    KIAA1261   573 IWD    575  

SM00320: domain 3 of 7, from 580 to 619: score 31.0, E = 0.00017
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t++  ++l+      +++++a+spd+      ++ +s+++Dg+i +W
    KIAA1261   580    TpRIKAELTSSAP--ACYALAISPDS------KVCFSCCsDGNIAVW 618  

                   d<-*
                   d   
    KIAA1261   619 D    619  

SM00320: domain 4 of 7, from 622 to 661: score 44.0, E = 2e-08
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++l+r ++gHt+  + +++++s dg      + l +g+ D+t+r W
    KIAA1261   622    NqTLVRQFQGHTD--GASCIDISNDG------TKLWTGGlDNTVRSW 660  

                   d<-*
                   d   
    KIAA1261   661 D    661  

SM00320: domain 5 of 7, from 664 to 702: score 6.9, E = 40
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++++l+  +  t+   + s+ ++p+g      ++la+g +++++ + 
    KIAA1261   664    EgRQLQQHD-FTS--QIFSLGYCPTG------EWLAVGMeNSNVEVL 701  

                   d<-*
                   +   
    KIAA1261   702 H    702  

SM00320: domain 6 of 7, from 704 to 743: score 24.7, E = 0.012
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t+   + l+ H++   V+s++f + g      ++++s ++D+ +  W
    KIAA1261   704    TkPDKYQLHLHES--CVLSLKFAHCG------KWFVSTGkDNLLNAW 742  

                   d<-*
                       
    KIAA1261   743 R    743  

SM00320: domain 7 of 7, from 744 to 784: score 17.9, E = 0.71
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t+   ++++  ++ s+V+s+++s d+      +++++gs+D++  ++
    KIAA1261   744    TpYGASIFQSKES-SSVLSCDISVDD------KYIVTGSgDKKATVY 783  

                   d<-*
                   +   
    KIAA1261   784 E    784  

//