hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-21450705/chunk_1/iprscan-20080501-21450705.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1256 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00326 399.0 2.6e-115 5 SM00027 299.0 3.3e-85 2 SM00325 207.5 1.2e-57 1 SM00239 84.5 1.3e-20 1 SM00233 51.3 1.2e-10 1 SM00054 47.2 2.1e-09 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00027 1/2 21 115 .. 1 98 [] 148.5 6.9e-40 SM00054 1/2 64 92 .. 1 29 [] 25.1 0.0098 SM00027 2/2 243 338 .. 1 98 [] 150.5 1.7e-40 SM00054 2/2 287 315 .. 1 29 [] 22.1 0.077 SM00326 1/5 739 796 .. 1 58 [] 85.1 8.5e-21 SM00326 2/5 880 934 .. 1 58 [] 74.8 1e-17 SM00326 3/5 963 1017 .. 1 58 [] 82.8 4.1e-20 SM00326 4/5 1035 1095 .. 1 58 [] 61.8 8.7e-14 SM00326 5/5 1109 1164 .. 1 58 [] 94.5 1.2e-23 SM00325 1/1 1192 1373 .. 1 211 [] 207.5 1.2e-57 SM00233 1/1 1414 1525 .. 1 82 [] 51.3 1.2e-10 SM00239 1/1 1549 1646 .. 1 92 [] 84.5 1.3e-20 Alignments of top-scoring domains: SM00027: domain 1 of 2, from 21 to 115: score 148.5, E = 6.9e-40 *->eWaispedkakYdqiFrsldpdqdGtvsGaqakpiflkSgLPqtlLa +Wai++e++ k+d +F+ l+p G+++G+qa+++fl+SgLP+++La KIAA1256 21 MWAITSEERTKHDRQFDNLKP-SGGYITGDQARNFFLQSGLPAPVLA 66 kIWaLaDidkdGeLdrePEFalAmhLiyrklnGgepiPasLPpelippsk IWaL+D +kdG++d++ EF++Am+Li++kl+G +++P +LPp + +p+ KIAA1256 67 EIWALSDLNKDGKMDQQ-EFSIAMKLIKLKLQG-QQLPVVLPPIMKQPPM 114 r<-* + KIAA1256 115 F 115 SM00054: domain 1 of 2, from 64 to 92: score 25.1, E = 0.0098 *->elkeaFrefDkDgdGkIdfeEfkallksl<-* l e++++ D ++dGk d +Ef ++k + KIAA1256 64 VLAEIWALSDLNKDGKMDQQEFSIAMKLI 92 SM00027: domain 2 of 2, from 243 to 338: score 150.5, E = 1.7e-40 *->eWaispedkakYdqiFrsldpdqdGtvsGaqakpiflkSgLPqtlLa eWa+++ + kY q F++ld+ ++G++sG qa++ +l+S+L+qt+La KIAA1256 243 EWAVPQPTRLKYRQKFNTLDKSMSGYLSGFQARNALLQSNLSQTQLA 289 kIWaLaDidkdGeLdrePEFalAmhLiyrklnGgepiPasLPpelippsk +IW+LaD d+dG+L e EF+lAmhL +++++G +p+P +LPpel+pps+ KIAA1256 290 TIWTLADVDGDGQLKAE-EFILAMHLTDMAKAG-QPLPLTLPPELVPPSF 337 r<-* r KIAA1256 338 R 338 SM00054: domain 2 of 2, from 287 to 315: score 22.1, E = 0.077 *->elkeaFrefDkDgdGkIdfeEfkallksl<-* +l ++ ++D+DgdG++ eEf+ +++ KIAA1256 287 QLATIWTLADVDGDGQLKAEEFILAMHLT 315 SM00326: domain 1 of 5, from 739 to 796: score 85.1, E = 8.5e-21 *->eyvvAlYDyeaqnedELsFkkGDiitvleks..ddgWweGelnrtGk + ++AlY++ea+n+dE+sF+ GDii+v ek+ +++gW++G + G+ KIAA1256 739 VNYRALYPFEARNHDEMSFNSGDIIQVDEKTvgEPGWLYGSFQ--GN 783 eGlfPsnYVeeie<-* G+fP+nYVe+++ KIAA1256 784 FGWFPCNYVEKMP 796 SM00326: domain 2 of 5, from 880 to 934: score 74.8, E = 1e-17 *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG +++Al++++a +++L F+k Diitvle+ ++Ww Ge++ G +G KIAA1256 880 LKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVH--GGRG 923 lfPsnYVeeie<-* +fP++YV++i+ KIAA1256 924 WFPKSYVKIIP 934 SM00326: domain 3 of 5, from 963 to 1017: score 82.8, E = 4.1e-20 *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG e+++AlY+y + ++++L+F++G+ i+v++k d++Ww G ++ + G KIAA1256 963 EEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIG--DRSG 1006 lfPsnYVeeie<-* +fPsnYV++++ KIAA1256 1007 IFPSNYVKPKD 1017 SM00326: domain 4 of 5, from 1035 to 1095: score 61.8, E = 8.7e-14 *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnr...tG e +++ +y a++++ Ls+ +G+ i++l+k+ +gWw+Gel+ ++++ KIAA1256 1035 EIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQArgkKR 1081 keGlfPsnYVeeie<-* ++G+fP+++V+++ KIAA1256 1082 QKGWFPASHVKLLG 1095 SM00326: domain 5 of 5, from 1109 to 1164: score 94.5, E = 1.2e-23 *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG ++v+A+YDy a nedELsF+kG+ i v +k+d++Ww+Ge+n G +G KIAA1256 1109 CQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEIN--GVTG 1153 lfPsnYVeeie<-* lfPsnYV+ + KIAA1256 1154 LFPSNYVKMTT 1164 SM00325: domain 1 of 1, from 1192 to 1373: score 207.5, E = 1.2e-57 *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl ++EL+qTE+ Y dL+++vevf+k++ +++ +l++ e+ ++ KIAA1256 1192 YIHELIQTEERYMADLQLVVEVFQKRMAESG------FLTEGEMALI 1232 FgpNieeiyefHrrFLdeLeerveewl.lskdlKsernsviedsgerigd F N+ e++ ++++L++L r +++ ++++ ++++igd KIAA1256 1233 FV-NWKELIMSNTKLLKALRVR-KKTGgEKM------------PVQMIGD 1268 vFlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeies ++ ++ ++++++Y+++cs + + +ll++ k++++ +F++flk++ s KIAA1256 1269 ILAAE---LSHMQAYIRFCSCQLNGAALLQQ--KTDEDTDFKEFLKKLAS 1313 kpncrsksearltLeslLikPvQRltkYpLLLkellkhtppdhedredLk +p+c +++L+s+L+kP+QR+t+YpLL++ +l +tp++h d+ Lk KIAA1256 1314 DPRCK-----GMPLSSFLLKPMQRITRYPLLIRSILENTPESHADHSSLK 1358 kAleaikelasqvNe<-* Ale +el+sqvNe KIAA1256 1359 LALERAEELCSQVNE 1373 SM00233: domain 1 of 1, from 1414 to 1525: score 51.3, E = 1.2e-10 *->vikeGwLlkkskswkkryfvLfn..gvLlyyksk............. ++++G L+k + s k+ + +Lfn+ L+y + ++++++ ++ KIAA1256 1414 LLHSGKLYKTK-SNKELHGFLFNdfLLLTYMVKQfavssgseklfss 1459 .......kpkgsipLsgcsvre.p.......cFeivt.drtlllqAesee +++ + + +k +i+L+++ v+ ++++++++++F i++ dr+++l++++ KIAA1256 1460 ksnaqfkMYKTPIFLNEVLVKLpTdpssdepVFHISHiDRVYTLRTDNIN 1509 ereeWvealqsaiaka<-* er+ Wv+ +++a++++ KIAA1256 1510 ERTAWVQKIKAASEQY 1525 SM00239: domain 1 of 1, from 1549 to 1646: score 84.5, E = 1.3e-20 *->tLtvkiisArnLp........DPYVkvs......kTkvvkktlsgfN +L+v++i+A L+ +++++++PY+++s ++++ T+++++tl N KIAA1256 1549 RLMVHVIEATELKackpngksNPYCEISmgsqsyTTRTIQDTL---N 1592 PvWnEesetFeFevpp...s.LeieVyDk......dfiGrvtippnnahq P+Wn ++F + + ++ L+++++D++ +++df+Gr++ip KIAA1256 1593 PKWNF---NCQFFIKDlyqDvLCLTLFDRdqfspdDFLGRTEIP------ 1633 hsadglihlsell.ggrh.kl<-* + ++++++++++ KIAA1256 1634 --------VAKIRtEQESkGP 1646 //