hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-21432351/chunk_1/iprscan-20080501-21432351.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1255 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00248 380.2 1.3e-109 21 SM00064 102.7 4.3e-26 1 SM00225 79.3 4.6e-19 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00225 1/1 131 225 .. 1 114 [] 79.3 4.6e-19 SM00248 1/21 318 347 .. 1 30 [] 15.2 9.3 SM00248 2/21 351 380 .. 1 30 [] 12.3 69 SM00248 3/21 385 425 .. 1 30 [] 15.8 6.2 SM00248 4/21 429 459 .. 1 30 [] 21.1 0.16 SM00248 5/21 463 515 .. 1 30 [] 0.2 4.4e+03 SM00248 6/21 553 582 .. 1 30 [] 28.7 0.00078 SM00248 7/21 605 635 .. 1 30 [] 25.8 0.0062 SM00248 8/21 651 680 .. 1 30 [] 11.3 1.4e+02 SM00248 9/21 684 713 .. 1 30 [] 25.2 0.009 SM00248 10/21 717 746 .. 1 30 [] 17.8 1.5 SM00248 11/21 750 779 .. 1 30 [] 19.6 0.45 SM00248 12/21 787 816 .. 1 30 [] 17.3 2.1 SM00248 13/21 832 861 .. 1 30 [] 39.5 4.6e-07 SM00248 14/21 865 893 .. 1 30 [] 20.2 0.29 SM00248 15/21 899 928 .. 1 30 [] 4.1 1.3e+03 SM00248 16/21 933 962 .. 1 30 [] 21.2 0.15 SM00248 17/21 968 997 .. 1 30 [] 26.3 0.0042 SM00248 18/21 1001 1030 .. 1 30 [] 20.5 0.23 SM00248 19/21 1034 1064 .. 1 30 [] 21.6 0.11 SM00248 20/21 1068 1102 .. 1 30 [] 0.1 4.6e+03 SM00248 21/21 1106 1137 .. 1 30 [] 16.4 4.1 SM00064 1/1 1162 1228 .. 1 81 [] 102.7 4.3e-26 Alignments of top-scoring domains: SM00225: domain 1 of 1, from 131 to 225: score 79.3, E = 4.6e-19 *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes. +D+++ vg+ ++++a Hk+vLaa+ S+ + +s+ KIAA1255 131 SDLKIKVGD---------RHISA--HKFVLAAR---SDSWSLANLSs 163 ...ieldDeallievspeaFralLnflYt.kldlpeedvenveelLelAd +++ l+D +pe+ ++L+++Yt++l++ e+d + + el++lA+ KIAA1255 164 tkeLDLSD------ANPEVTMTMLRWIYTdELEFREDD-VFLTELMKLAN 206 fldSYGqip.lvelCeefllknl<-* ++ q++ l+e Ce+ + KIAA1255 207 RF----QLQlLRERCEKGVMSLV 225 SM00248: domain 1 of 21, from 318 to 347: score 15.2, E = 9.3 *->dGrTpLHlAaengnlevvklLldkgadina<-* +G+ +L lA ++ ++++ L++++ad+++ KIAA1255 318 NGDLALDLALSRRLESIATTLVSHKADVDM 347 SM00248: domain 2 of 21, from 351 to 380: score 12.3, E = 69 *->dGrTpLHlAaengnlevvklLldkgadina<-* G++ LH +++g+l + +L+++ga +na KIAA1255 351 SGWSLLHKGIQRGDLFAATFLIKNGAFVNA 380 SM00248: domain 3 of 21, from 385 to 425: score 15.8, E = 6.2 *->dGrTpLHlAaen...........gnlevvklLldkgadina<-* TpLHl a +++++++ + + ++++Ll++ga++n+ KIAA1255 385 AQETPLHLVALYsskkhsadvmsEMAQIAEALLQAGANPNM 425 SM00248: domain 4 of 21, from 429 to 459: score 21.1, E = 0.16 *->dGrTpLHlAaengnlevvklLldkga.dina<-* GrTpLH+ ++ gn+ v Ll+ + d+++ KIAA1255 429 KGRTPLHVSIMAGNEYVFSQLLQCKQlDLEL 459 SM00248: domain 5 of 21, from 463 to 515: score 0.2, E = 4.4e+03 *->dGrTpLHlAaen.......................gnlevvklLldk +G T+L+lA+++ + +++++ ++ ++ + ++++ + +++ L+++ KIAA1255 463 EGSTALWLAVQHitvssdqsvnpfedvpvvngtsfDENSFAARLIQR 509 gadina<-* g +a KIAA1255 510 GSHTDA 515 SM00248: domain 6 of 21, from 553 to 582: score 28.7, E = 0.00078 *->dGrTpLHlAaengnlevvklLldkgadina<-* G TpLH A+++g ++ +Ll+ ga++n+ KIAA1255 553 WGETPLHTACRHGLANLTAELLQQGANPNL 582 SM00248: domain 7 of 21, from 605 to 635: score 25.8, E = 0.0062 *->dGrTpLHlAaengnlevvklLldkga.dina<-* + +TpLH+A+++++++vv +l+ +a+ ++a KIAA1255 605 HLQTPLHMAIAYNHPDVVSVILEQKAnALHA 635 SM00248: domain 8 of 21, from 651 to 680: score 11.3, E = 1.4e+02 *->dGrTpLHlAaengnlevvklLldkgadina<-* ++T L lA +g + ++ Ll +ga in+ KIAA1255 651 RDQTVLGLALWTGMHTIAAQLLGSGAAIND 680 SM00248: domain 9 of 21, from 684 to 713: score 25.2, E = 0.009 *->dGrTpLHlAaengnlevvklLldkgadina<-* dG+T LH+A+++ + + + +Ll++ adin+ KIAA1255 684 DGQTLLHMAIQRQDSKSALFLLEHQADINV 713 SM00248: domain 10 of 21, from 717 to 746: score 17.8, E = 1.5 *->dGrTpLHlAaengnlevvklLldkgadina<-* dG T+L lA++n + vv ++ +gad+ + KIAA1255 717 DGETALQLAIRNQLPLVVDAICTRGADMSV 746 SM00248: domain 11 of 21, from 750 to 779: score 19.6, E = 0.45 *->dGrTpLHlAaengnlevvklLldkgadina<-* G+ pL+lA +n+ ++++ L+++g d ++ KIAA1255 750 KGNPPLWLALANNLEDIASTLVRHGCDATC 779 SM00248: domain 12 of 21, from 787 to 816: score 17.3, E = 2.1 *->dGrTpLHlAaengnlevvklLldkgadina<-* +T LH A+ ++n+ ++ +L+++g d+n KIAA1255 787 CLQTLLHRAIDENNEPTACFLIRSGCDVNS 816 SM00248: domain 13 of 21, from 832 to 861: score 39.5, E = 4.6e-07 *->dGrTpLHlAaengnlevvklLldkgadina<-* dG+TpLHlAa++g +e+v++Ll+ ga++na KIAA1255 832 DGQTPLHLAASWGLEETVQCLLEFGANVNA 861 SM00248: domain 14 of 21, from 865 to 893: score 20.2, E = 0.29 *->dGrTpLHlAaengnlevvklLldkgadina<-* +GrTp+H+A+++ + +++lL+++ di++ KIAA1255 865 EGRTPIHVAISSQHGVIIQLLVSHP-DIHL 893 SM00248: domain 15 of 21, from 899 to 928: score 4.1, E = 1.3e+03 *->dGrTpLHlAaengnlevvklLldkgadina<-* +G Tp+ +A+ +n + ++++l++ + KIAA1255 899 QGLTPFACAMTFKNNKSAEAILKRESGAAE 928 SM00248: domain 16 of 21, from 933 to 962: score 21.2, E = 0.15 *->dGrTpLHlAaengnlevvklLldkgadina<-* Gr+ LH+A++n ++e v +L++ a++n KIAA1255 933 KGRNFLHVAVQNSDIESVLFLISVHANVNS 962 SM00248: domain 17 of 21, from 968 to 997: score 26.3, E = 0.0042 *->dGrTpLHlAaengnlevvklLldkgadina<-* TpLHlA++ g++ +v+ Ll +ga +n+ KIAA1255 968 SKLTPLHLAVQAGSEIIVRNLLLAGAKVNE 997 SM00248: domain 18 of 21, from 1001 to 1030: score 20.5, E = 0.23 *->dGrTpLHlAaengnlevvklLldkgadina<-* + +T+LHlAa+ + + ++ Ll++g+d+ a KIAA1255 1001 HRQTALHLAAQQDLPTICSVLLENGVDFAA 1030 SM00248: domain 19 of 21, from 1034 to 1064: score 21.6, E = 0.11 *->dGrTpLHlAaengnlevvklLldkga.dina<-* +G+++LHlA+++g+l+ ++ Ll + d +a KIAA1255 1034 NGNNALHLAVMHGRLNNIRVLLTECTvDAEA 1064 SM00248: domain 20 of 21, from 1068 to 1102: score 0.1, E = 4.6e+03 *->dGrTpLHlAaen...gnlevvklLldkga..dina<-* G++pLH+ ++++++ + l+l+ ++ +++ KIAA1255 1068 RGQSPLHILGQYgkeNAAAIFDLFLECMPgyPLDK 1102 SM00248: domain 21 of 21, from 1106 to 1137: score 16.4, E = 4.1 *->dGrTpLHlAaengnlevvklLldkga..dina<-* dG T L lA ++gn +++++++++ga+ +n KIAA1255 1106 DGSTVLLLAYMKGNANLCRAIVRSGArlGVNN 1137 SM00064: domain 1 of 1, from 1162 to 1228: score 102.7, E = 4.3e-26 *->etaphWvpDeeasnClmnCgkeFtlvtrRrHHCRnCGrifCskCssk ++p+W+++ s C ++C + F++ t+R+HHCR+CGr++C+kCs+k KIAA1255 1162 SKEPPWCDG---SYC-YECTARFGV-TTRKHHCRHCGRLLCHKCSTK 1203 kaplpklgkekkngknedftpvRVCdsCyerlsk<-* ++p++k+ +k pvRVC+ C++ l KIAA1255 1204 EIPIIKFDLNK---------PVRVCNICFDVLTL 1228 //