hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-21432351/chunk_1/iprscan-20080501-21432351.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1255 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00023.20.ls Ankyrin repeat 459.2 4.9e-135 21 PF00023.20.fs Ankyrin repeat 419.2 5.4e-123 21 PF01363.12.ls FYVE zinc finger 82.4 1.3e-21 1 PF01363.12.fs FYVE zinc finger 80.6 1.5e-21 1 PF00651.21.fs BTB/POZ domain 46.3 1.9e-12 1 PF00651.21.ls BTB/POZ domain 44.1 4.5e-10 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00651.21.fs 1/1 121 219 .. 1 129 [. 46.3 1.9e-12 PF00651.21.ls 1/1 121 225 .. 1 135 [] 44.1 4.5e-10 PF00023.20.fs 1/21 318 350 .. 1 33 [] 19.8 0.00016 PF00023.20.ls 1/21 318 350 .. 1 33 [] 21.8 0.0023 PF00023.20.fs 2/21 351 383 .. 1 33 [] 15.0 0.0034 PF00023.20.ls 2/21 351 383 .. 1 33 [] 17.0 0.065 PF00023.20.ls 3/21 385 428 .. 1 33 [] 31.4 2.9e-06 PF00023.20.fs 3/21 385 428 .. 1 33 [] 29.4 3.2e-07 PF00023.20.ls 4/21 429 462 .. 1 33 [] 18.7 0.02 PF00023.20.fs 4/21 429 462 .. 1 33 [] 16.7 0.0011 PF00023.20.fs 5/21 463 518 .. 1 33 [] 8.0 0.31 PF00023.20.ls 5/21 463 518 .. 1 33 [] 10.0 1.1 PF00023.20.fs 6/21 520 552 .. 1 33 [] 10.8 0.049 PF00023.20.ls 6/21 520 552 .. 1 33 [] 12.8 0.4 PF00023.20.fs 7/21 553 585 .. 1 33 [] 40.2 3.2e-10 PF00023.20.ls 7/21 553 585 .. 1 33 [] 42.2 1.7e-09 PF00023.20.fs 8/21 605 637 .. 1 33 [] 30.4 1.7e-07 PF00023.20.ls 8/21 605 637 .. 1 33 [] 32.4 1.5e-06 PF00023.20.ls 9/21 651 683 .. 1 33 [] 6.6 3.3 PF00023.20.fs 9/21 651 683 .. 1 33 [] 4.6 2.7 PF00023.20.fs 10/21 684 716 .. 1 33 [] 28.9 4.6e-07 PF00023.20.ls 10/21 684 716 .. 1 33 [] 30.9 4.3e-06 PF00023.20.fs 11/21 717 749 .. 1 33 [] 19.6 0.00017 PF00023.20.ls 11/21 717 749 .. 1 33 [] 21.6 0.0026 PF00023.20.fs 12/21 750 776 .. 1 27 [. 12.5 0.017 PF00023.20.ls 12/21 750 782 .. 1 33 [] 12.6 0.44 PF00023.20.fs 13/21 787 819 .. 1 33 [] 11.9 0.025 PF00023.20.ls 13/21 787 819 .. 1 33 [] 13.9 0.29 PF00023.20.ls 14/21 832 864 .. 1 33 [] 51.1 3.4e-12 PF00023.20.fs 14/21 832 864 .. 1 33 [] 49.1 1e-12 PF00023.20.ls 15/21 865 898 .. 1 33 [] 19.7 0.0095 PF00023.20.fs 15/21 865 898 .. 1 33 [] 17.7 0.00058 PF00023.20.fs 16/21 933 965 .. 1 33 [] 15.1 0.0031 PF00023.20.ls 16/21 933 965 .. 1 33 [] 17.1 0.058 PF00023.20.ls 17/21 968 1000 .. 1 33 [] 31.3 3.1e-06 PF00023.20.fs 17/21 968 1000 .. 1 33 [] 29.3 3.4e-07 PF00023.20.fs 18/21 1001 1033 .. 1 33 [] 23.8 1.2e-05 PF00023.20.ls 18/21 1001 1033 .. 1 33 [] 25.8 0.00014 PF00023.20.fs 19/21 1034 1067 .. 1 33 [] 17.8 0.00055 PF00023.20.ls 19/21 1034 1067 .. 1 33 [] 19.8 0.009 PF00023.20.ls 20/21 1068 1105 .. 1 33 [] 3.0 11 PF00023.20.fs 20/21 1068 1105 .. 1 33 [] 1.0 26 PF00023.20.fs 21/21 1106 1138 .. 1 33 [] 17.6 0.00065 PF00023.20.ls 21/21 1106 1138 .. 1 33 [] 19.6 0.011 PF01363.12.fs 1/1 1165 1228 .. 1 77 [] 80.6 1.5e-21 PF01363.12.ls 1/1 1165 1228 .. 1 77 [] 82.4 1.3e-21 Alignments of top-scoring domains: PF00651.21.fs: domain 1 of 1, from 121 to 219: score 46.3, E = 1.9e-12 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSp..YFk +l++q++++D ++vgd +++ AHK+vLaa+S++ KIAA1255 121 VADLYEQEQYSDLKIKVGD--------RHISAHKFVLAARSDswSLA 159 alFtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdq +l + + e++l+d +pe+ +L++iYt+el++ KIAA1255 160 NLSSTK--------------ELDLSDANPEVTMTMLRWIYTDELEFR--- 192 ksPssckseenve..dlLaaAadllqipslvdaCee<-* e++v ++l+++A +++q++ l++ Ce+ KIAA1255 193 --------EDDVFltELMKLA-NRFQLQLLRERCEK 219 PF00651.21.ls: domain 1 of 1, from 121 to 225: score 44.1, E = 4.5e-10 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSp..YFk +l++q++++D ++vgd +++ AHK+vLaa+S++ KIAA1255 121 VADLYEQEQYSDLKIKVGD--------RHISAHKFVLAARSDswSLA 159 alFtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdq +l + + e++l+d +pe+ +L++iYt+el++ KIAA1255 160 NLSSTK--------------ELDLSDANPEVTMTMLRWIYTDELEFR--- 192 ksPssckseenve..dlLaaAadllqipslvdaCeefliksl<-* e++v ++l+++A +++q++ l++ Ce+ KIAA1255 193 --------EDDVFltELMKLA-NRFQLQLLRERCEKGVMSLV 225 PF00023.20.fs: domain 1 of 21, from 318 to 350: score 19.8, E = 0.00016 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+ +L lA +r +++++ L+s+ Ad++++d+ KIAA1255 318 NGDLALDLALSRRLESIATTLVSHKADVDMVDK 350 PF00023.20.ls: domain 1 of 21, from 318 to 350: score 21.8, E = 0.0023 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+ +L lA +r +++++ L+s+ Ad++++d+ KIAA1255 318 NGDLALDLALSRRLESIATTLVSHKADVDMVDK 350 PF00023.20.fs: domain 2 of 21, from 351 to 383: score 15.0, E = 0.0034 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G++ LH ++rg+l +++L+++GA +na + KIAA1255 351 SGWSLLHKGIQRGDLFAATFLIKNGAFVNAATL 383 PF00023.20.ls: domain 2 of 21, from 351 to 383: score 17.0, E = 0.065 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G++ LH ++rg+l +++L+++GA +na + KIAA1255 351 SGWSLLHKGIQRGDLFAATFLIKNGAFVNAATL 383 PF00023.20.ls: domain 3 of 21, from 385 to 428: score 31.4, E = 2.9e-06 *->dGfTPLHlAalrg...........nlevvklLlsqGAdlnaqdd<-* +TPLHl al+ +++++ + ++ +++++ Ll++GA++n+qd KIAA1255 385 AQETPLHLVALYSskkhsadvmseMAQIAEALLQAGANPNMQDS 428 PF00023.20.fs: domain 3 of 21, from 385 to 428: score 29.4, E = 3.2e-07 *->dGfTPLHlAalrg...........nlevvklLlsqGAdlnaqdd<-* +TPLHl al+ +++++ + ++ +++++ Ll++GA++n+qd KIAA1255 385 AQETPLHLVALYSskkhsadvmseMAQIAEALLQAGANPNMQDS 428 PF00023.20.ls: domain 4 of 21, from 429 to 462: score 18.7, E = 0.02 *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-* G+TPLH+ ++ gn+ v + Ll+ + dl ++d KIAA1255 429 KGRTPLHVSIMAGNEYVFSQLLQcKQLDLELKDH 462 PF00023.20.fs: domain 4 of 21, from 429 to 462: score 16.7, E = 0.0011 *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-* G+TPLH+ ++ gn+ v + Ll+ + dl ++d KIAA1255 429 KGRTPLHVSIMAGNEYVFSQLLQcKQLDLELKDH 462 PF00023.20.fs: domain 5 of 21, from 463 to 518: score 8.0, E = 0.31 *->dGfTPLHlAalrg.......................nlevvklLlsq +G T+L lA+++ +++ + ++ ++ + ++ + + + + L+++ KIAA1255 463 EGSTALWLAVQHItvssdqsvnpfedvpvvngtsfdENSFAARLIQR 509 GAdlnaqdd<-* G +a d KIAA1255 510 GSHTDAPDT 518 PF00023.20.ls: domain 5 of 21, from 463 to 518: score 10.0, E = 1.1 *->dGfTPLHlAalrg.......................nlevvklLlsq +G T+L lA+++ +++ + ++ ++ + ++ + + + + L+++ KIAA1255 463 EGSTALWLAVQHItvssdqsvnpfedvpvvngtsfdENSFAARLIQR 509 GAdlnaqdd<-* G +a d KIAA1255 510 GSHTDAPDT 518 PF00023.20.fs: domain 6 of 21, from 520 to 552: score 10.8, E = 0.049 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+ L Aa gn+ + +L +GA +n++++ KIAA1255 520 TGNCLLQRAAGAGNEAAALFLATNGAHVNHRNK 552 PF00023.20.ls: domain 6 of 21, from 520 to 552: score 12.8, E = 0.4 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+ L Aa gn+ + +L +GA +n++++ KIAA1255 520 TGNCLLQRAAGAGNEAAALFLATNGAHVNHRNK 552 PF00023.20.fs: domain 7 of 21, from 553 to 585: score 40.2, E = 3.2e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+TPLH A+++g +++ +Ll+qGA++n+q+ KIAA1255 553 WGETPLHTACRHGLANLTAELLQQGANPNLQTE 585 PF00023.20.ls: domain 7 of 21, from 553 to 585: score 42.2, E = 1.7e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+TPLH A+++g +++ +Ll+qGA++n+q+ KIAA1255 553 WGETPLHTACRHGLANLTAELLQQGANPNLQTE 585 PF00023.20.fs: domain 8 of 21, from 605 to 637: score 30.4, E = 1.7e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + +TPLH+A+ +++++vv+ l+q A+ + ++ KIAA1255 605 HLQTPLHMAIAYNHPDVVSVILEQKANALHATN 637 PF00023.20.ls: domain 8 of 21, from 605 to 637: score 32.4, E = 1.5e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + +TPLH+A+ +++++vv+ l+q A+ + ++ KIAA1255 605 HLQTPLHMAIAYNHPDVVSVILEQKANALHATN 637 PF00023.20.ls: domain 9 of 21, from 651 to 683: score 6.6, E = 3.3 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +T L lA g + ++ Ll+ GA +n + KIAA1255 651 RDQTVLGLALWTGMHTIAAQLLGSGAAINDTMS 683 PF00023.20.fs: domain 9 of 21, from 651 to 683: score 4.6, E = 2.7 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +T L lA g + ++ Ll+ GA +n + KIAA1255 651 RDQTVLGLALWTGMHTIAAQLLGSGAAINDTMS 683 PF00023.20.fs: domain 10 of 21, from 684 to 716: score 28.9, E = 4.6e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+T LH+A++r + + + +Ll++ Ad+n+++ KIAA1255 684 DGQTLLHMAIQRQDSKSALFLLEHQADINVRTQ 716 PF00023.20.ls: domain 10 of 21, from 684 to 716: score 30.9, E = 4.3e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+T LH+A++r + + + +Ll++ Ad+n+++ KIAA1255 684 DGQTLLHMAIQRQDSKSALFLLEHQADINVRTQ 716 PF00023.20.fs: domain 11 of 21, from 717 to 749: score 19.6, E = 0.00017 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+T+L lA+++ + vv +GAd + d KIAA1255 717 DGETALQLAIRNQLPLVVDAICTRGADMSVPDE 749 PF00023.20.ls: domain 11 of 21, from 717 to 749: score 21.6, E = 0.0026 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+T+L lA+++ + vv +GAd + d KIAA1255 717 DGETALQLAIRNQLPLVVDAICTRGADMSVPDE 749 PF00023.20.fs: domain 12 of 21, from 750 to 776: score 12.5, E = 0.017 *->dGfTPLHlAalrgnlevvklLlsqGAd<-* G+ PL lA ++ +++++ L+ +G+d KIAA1255 750 KGNPPLWLALANNLEDIASTLVRHGCD 776 PF00023.20.ls: domain 12 of 21, from 750 to 782: score 12.6, E = 0.44 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+ PL lA ++ +++++ L+ +G+d KIAA1255 750 KGNPPLWLALANNLEDIASTLVRHGCDATCWGP 782 PF00023.20.fs: domain 13 of 21, from 787 to 819: score 11.9, E = 0.025 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + +T LH A+ +n+ + +L+ G+d+n KIAA1255 787 CLQTLLHRAIDENNEPTACFLIRSGCDVNSPRQ 819 PF00023.20.ls: domain 13 of 21, from 787 to 819: score 13.9, E = 0.29 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + +T LH A+ +n+ + +L+ G+d+n KIAA1255 787 CLQTLLHRAIDENNEPTACFLIRSGCDVNSPRQ 819 PF00023.20.ls: domain 14 of 21, from 832 to 864: score 51.1, E = 3.4e-12 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+TPLHlAa++g +e v++Ll+ GA++naqd KIAA1255 832 DGQTPLHLAASWGLEETVQCLLEFGANVNAQDA 864 PF00023.20.fs: domain 14 of 21, from 832 to 864: score 49.1, E = 1e-12 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+TPLHlAa++g +e v++Ll+ GA++naqd KIAA1255 832 DGQTPLHLAASWGLEETVQCLLEFGANVNAQDA 864 PF00023.20.ls: domain 15 of 21, from 865 to 898: score 19.7, E = 0.0095 *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-* +G+TP+H+A+++ + +++lL+s+ ln++d+ KIAA1255 865 EGRTPIHVAISSQHGVIIQLLVShPDIHLNVRDR 898 PF00023.20.fs: domain 15 of 21, from 865 to 898: score 17.7, E = 0.00058 *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-* +G+TP+H+A+++ + +++lL+s+ ln++d+ KIAA1255 865 EGRTPIHVAISSQHGVIIQLLVShPDIHLNVRDR 898 PF00023.20.fs: domain 16 of 21, from 933 to 965: score 15.1, E = 0.0031 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+ LH+A+++ ++e v +L+s A++n + KIAA1255 933 KGRNFLHVAVQNSDIESVLFLISVHANVNSRVQ 965 PF00023.20.ls: domain 16 of 21, from 933 to 965: score 17.1, E = 0.058 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+ LH+A+++ ++e v +L+s A++n + KIAA1255 933 KGRNFLHVAVQNSDIESVLFLISVHANVNSRVQ 965 PF00023.20.ls: domain 17 of 21, from 968 to 1000: score 31.3, E = 3.1e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* TPLHlA++ g++ +v+ Ll +GA +n ++ KIAA1255 968 SKLTPLHLAVQAGSEIIVRNLLLAGAKVNELTK 1000 PF00023.20.fs: domain 17 of 21, from 968 to 1000: score 29.3, E = 3.4e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* TPLHlA++ g++ +v+ Ll +GA +n ++ KIAA1255 968 SKLTPLHLAVQAGSEIIVRNLLLAGAKVNELTK 1000 PF00023.20.fs: domain 18 of 21, from 1001 to 1033: score 23.8, E = 1.2e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + +T+LHlAa+ + + +++ Ll++G d a+d KIAA1255 1001 HRQTALHLAAQQDLPTICSVLLENGVDFAAVDE 1033 PF00023.20.ls: domain 18 of 21, from 1001 to 1033: score 25.8, E = 0.00014 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + +T+LHlAa+ + + +++ Ll++G d a+d KIAA1255 1001 HRQTALHLAAQQDLPTICSVLLENGVDFAAVDE 1033 PF00023.20.fs: domain 19 of 21, from 1034 to 1067: score 17.8, E = 0.00055 *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-* +G+ +LHlA+++g+l+ ++ Ll ++ d a + KIAA1255 1034 NGNNALHLAVMHGRLNNIRVLLTeCTVDAEAFNL 1067 PF00023.20.ls: domain 19 of 21, from 1034 to 1067: score 19.8, E = 0.009 *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-* +G+ +LHlA+++g+l+ ++ Ll ++ d a + KIAA1255 1034 NGNNALHLAVMHGRLNNIRVLLTeCTVDAEAFNL 1067 PF00023.20.ls: domain 20 of 21, from 1068 to 1105: score 3.0, E = 11 *->dGfTPLHlAalrg...nlevvklLls..qGAdlnaqdd<-* G++PLH+ ++g+++ + + l+l+ G l+ d KIAA1255 1068 RGQSPLHILGQYGkenAAAIFDLFLEcmPGYPLDKPDA 1105 PF00023.20.fs: domain 20 of 21, from 1068 to 1105: score 1.0, E = 26 *->dGfTPLHlAalrg...nlevvklLls..qGAdlnaqdd<-* G++PLH+ ++g+++ + + l+l+ G l+ d KIAA1255 1068 RGQSPLHILGQYGkenAAAIFDLFLEcmPGYPLDKPDA 1105 PF00023.20.fs: domain 21 of 21, from 1106 to 1138: score 17.6, E = 0.00065 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG T L lA ++gn+++++ + GA l + ++ KIAA1255 1106 DGSTVLLLAYMKGNANLCRAIVRSGARLGVNNN 1138 PF00023.20.ls: domain 21 of 21, from 1106 to 1138: score 19.6, E = 0.011 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG T L lA ++gn+++++ + GA l + ++ KIAA1255 1106 DGSTVLLLAYMKGNANLCRAIVRSGARLGVNNN 1138 PF01363.12.fs: domain 1 of 1, from 1165 to 1228: score 80.6, E = 1.5e-21 *->phWvpDeevsnCmrCgkpFtkltkRrHHCRaCGrifCgsCssktvll p W + + C++C F+ +t+R+HHCR+CGr+ C +Cs k++++ KIAA1255 1165 PPWCDGSY---CYECTARFG-VTTRKHHCRHCGRLLCHKCSTKEIPI 1207 pylgiaallkndviekpvRVCdsCydrlnk<-* ++ +kpvRVC+ C+d l KIAA1255 1208 IKFDL---------NKPVRVCNICFDVLTL 1228 PF01363.12.ls: domain 1 of 1, from 1165 to 1228: score 82.4, E = 1.3e-21 *->phWvpDeevsnCmrCgkpFtkltkRrHHCRaCGrifCgsCssktvll p W + + C++C F+ +t+R+HHCR+CGr+ C +Cs k++++ KIAA1255 1165 PPWCDGSY---CYECTARFG-VTTRKHHCRHCGRLLCHKCSTKEIPI 1207 pylgiaallkndviekpvRVCdsCydrlnk<-* ++ +kpvRVC+ C+d l KIAA1255 1208 IKFDL---------NKPVRVCNICFDVLTL 1228 //