hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21401032/chunk_1/iprscan-20080501-21401032.nocrc
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Query sequence: KIAA1253
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03348.6.ls Serine incorporator (Serinc)                  1018.5   2.1e-303   1
PF03348.6.fs Serine incorporator (Serinc)                  1016.7   7.1e-303   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03348.6.fs   1/1      34   471 ..     1   485 []  1016.7 7.1e-303
PF03348.6.ls   1/1      34   471 ..     1   485 []  1018.5 2.1e-303

Alignments of top-scoring domains:
PF03348.6.fs: domain 1 of 1, from 34 to 471: score 1016.7, E = 7.1e-303
                   *->ACCcGsaaCaLcCrtcPSgknSrsGTRlmYAllLllgtivswVmlsP
                      +C+cGsa+C L+Cr+cPSg+nS++ TRl+YAl+Ll+g++v++Vml+P
    KIAA1253    34    PCLCGSAPC-LLCRCCPSGNNSTV-TRLIYALFLLVGVCVACVMLIP 78   

                   gvqkqleklpwfCegftklekyGALsAvsGGsagvpCeelvGYkAVYRVC
                   g+++ql+k+p+fCe    +ek           ++vpC++lvGYkAVYR+C
    KIAA1253    79 GMEEQLNKIPGFCE----NEK-----------GVVPCNILVGYKAVYRLC 113  

                   fGlAcFFllLsLlmiGVKSskDpRaaIhNGFWffKflllfaliigaFFIP
                   fGlA+F+llLsLlmi+VKSs+DpRaa+hNGFWffKf+ + a+iigaFFIP
    KIAA1253   114 FGLAMFYLLLSLLMIKVKSSSDPRAAVHNGFWFFKFAAAIAIIIGAFFIP 163  

                   nqetfitvwmyVGmvGaffFILvQLvLlVDFAHgWaEtWvekvEseDEnS
                   + +tf+tvw+yVGm+Gaf+FIL+QLvLl+DFAH+W+E+Wvek+E++  nS
    KIAA1253   164 E-GTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNESWVEKMEEG--NS 210  

                   rfWYaaLlvvTllmYlaslvalvllfvyfThsGddCglNkffiivnlilc
                   r+WYaaLl++T+l+Yl+slva+vl+fvy+Th+ ++C +Nk+fi+vn++lc
    KIAA1253   211 RCWYAALLSATALNYLLSLVAIVLFFVYYTHP-ASCSENKAFISVNMLLC 259  

                   vaiSvlSisPkVQErnPrSGLLQsSvISvYctYLTwSAlaSePdekeCNP
                   v++Sv+Si+Pk+QE++PrSGLLQsSvI+vY++YLTwSA+++eP e++CNP
    KIAA1253   260 VGASVMSILPKIQESQPRSGLLQSSVITVYTMYLTWSAMTNEP-ETNCNP 308  

                   GmFellsnvtkavstgLGSLFTFiAiAavtkddafrsafqvtntiGLlll
                      +lls+++ +++              v+k ++++++++ +++iGL+l+
    KIAA1253   309 ---SLLSIIGYNTTS------------TVPKEGQSVQWWHAQGIIGLILF 343  

                   llCivYssirassrtqlrkltdksdneEkellesalsdtedgtDseegkk
                   llC++Yssir+s+++q++klt  ++++E++l+e++  ++++++ +++  +
    KIAA1253   344 LLCVFYSSIRTSNNSQVNKLT--LTSDESTLIEDGGARSDGSLEDGDDVH 391  

                   eeeGPRvvDdEkkGVtYSYSfFHfiFfLASLYvMMtLTsWytyddssiel
                   ++     vD+E++GVtYSYSfFHf++fLASLY+MMtLT+Wy+y+ +s+e+
    KIAA1253   392 RA-----VDNERDGVTYSYSFFHFMLFLASLYIMMTLTNWYRYE-PSREM 435  

                   fnvrnwasvWVKivSSWicvgLYgWTLVAPiilPdReF<-*
                   ++  +w++vWVKi+SSWi+ +LY+WTLVAP++l++R+F   
    KIAA1253   436 KS--QWTAVWVKISSSWIGIVLYVWTLVAPLVLTNRDF    471  

PF03348.6.ls: domain 1 of 1, from 34 to 471: score 1018.5, E = 2.1e-303
                   *->ACCcGsaaCaLcCrtcPSgknSrsGTRlmYAllLllgtivswVmlsP
                      +C+cGsa+C L+Cr+cPSg+nS++ TRl+YAl+Ll+g++v++Vml+P
    KIAA1253    34    PCLCGSAPC-LLCRCCPSGNNSTV-TRLIYALFLLVGVCVACVMLIP 78   

                   gvqkqleklpwfCegftklekyGALsAvsGGsagvpCeelvGYkAVYRVC
                   g+++ql+k+p+fCe    +ek           ++vpC++lvGYkAVYR+C
    KIAA1253    79 GMEEQLNKIPGFCE----NEK-----------GVVPCNILVGYKAVYRLC 113  

                   fGlAcFFllLsLlmiGVKSskDpRaaIhNGFWffKflllfaliigaFFIP
                   fGlA+F+llLsLlmi+VKSs+DpRaa+hNGFWffKf+ + a+iigaFFIP
    KIAA1253   114 FGLAMFYLLLSLLMIKVKSSSDPRAAVHNGFWFFKFAAAIAIIIGAFFIP 163  

                   nqetfitvwmyVGmvGaffFILvQLvLlVDFAHgWaEtWvekvEseDEnS
                   + +tf+tvw+yVGm+Gaf+FIL+QLvLl+DFAH+W+E+Wvek+E++  nS
    KIAA1253   164 E-GTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNESWVEKMEEG--NS 210  

                   rfWYaaLlvvTllmYlaslvalvllfvyfThsGddCglNkffiivnlilc
                   r+WYaaLl++T+l+Yl+slva+vl+fvy+Th+ ++C +Nk+fi+vn++lc
    KIAA1253   211 RCWYAALLSATALNYLLSLVAIVLFFVYYTHP-ASCSENKAFISVNMLLC 259  

                   vaiSvlSisPkVQErnPrSGLLQsSvISvYctYLTwSAlaSePdekeCNP
                   v++Sv+Si+Pk+QE++PrSGLLQsSvI+vY++YLTwSA+++eP e++CNP
    KIAA1253   260 VGASVMSILPKIQESQPRSGLLQSSVITVYTMYLTWSAMTNEP-ETNCNP 308  

                   GmFellsnvtkavstgLGSLFTFiAiAavtkddafrsafqvtntiGLlll
                      +lls+++ +++              v+k ++++++++ +++iGL+l+
    KIAA1253   309 ---SLLSIIGYNTTS------------TVPKEGQSVQWWHAQGIIGLILF 343  

                   llCivYssirassrtqlrkltdksdneEkellesalsdtedgtDseegkk
                   llC++Yssir+s+++q++klt  ++++E++l+e++  ++++++ +++  +
    KIAA1253   344 LLCVFYSSIRTSNNSQVNKLT--LTSDESTLIEDGGARSDGSLEDGDDVH 391  

                   eeeGPRvvDdEkkGVtYSYSfFHfiFfLASLYvMMtLTsWytyddssiel
                   ++     vD+E++GVtYSYSfFHf++fLASLY+MMtLT+Wy+y+ +s+e+
    KIAA1253   392 RA-----VDNERDGVTYSYSFFHFMLFLASLYIMMTLTNWYRYE-PSREM 435  

                   fnvrnwasvWVKivSSWicvgLYgWTLVAPiilPdReF<-*
                   ++  +w++vWVKi+SSWi+ +LY+WTLVAP++l++R+F   
    KIAA1253   436 KS--QWTAVWVKISSSWIGIVLYVWTLVAPLVLTNRDF    471  

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