hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21351216/chunk_1/iprscan-20080501-21351216.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1250
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00248                                                 313.2    1.8e-89  11

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00248    1/11     43    72 ..     1    30 []    41.0  1.6e-07
SM00248    2/11     76   105 ..     1    30 []    24.4    0.016
SM00248    3/11    109   138 ..     1    30 []    38.6  8.5e-07
SM00248    4/11    142   171 ..     1    30 []    25.1   0.0094
SM00248    5/11    175   204 ..     1    30 []    36.2  4.6e-06
SM00248    6/11    208   237 ..     1    30 []    21.6     0.11
SM00248    7/11    241   270 ..     1    30 []    29.1  0.00061
SM00248    8/11    274   303 ..     1    30 []    28.1   0.0012
SM00248    9/11    307   336 ..     1    30 []    23.6    0.028
SM00248   10/11    340   369 ..     1    30 []    28.8  0.00074
SM00248   11/11    373   404 ..     1    30 []    16.7      3.3

Alignments of top-scoring domains:
SM00248: domain 1 of 11, from 43 to 72: score 41.0, E = 1.6e-07
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G+TpL++Aae gnle+vk+L+++ga++n+   
    KIAA1250    43    CGQTPLMIAAEQGNLEIVKELIKNGANCNL    72   

SM00248: domain 2 of 11, from 76 to 105: score 24.4, E = 0.016
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      d++T+L  A ++g++++v++Ll+ g++++    
    KIAA1250    76    DNWTALISASKEGHVHIVEELLKCGVNLEH    105  

SM00248: domain 3 of 11, from 109 to 138: score 38.6, E = 8.5e-07
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G+T+L++A+++g+ +vv+lLl++ga++ +   
    KIAA1250   109    GGWTALMWACYKGRTDVVELLLSHGANPSV    138  

SM00248: domain 4 of 11, from 142 to 171: score 25.1, E = 0.0094
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +   p+ +Aa +g+ ++v+lLl++ga +n+   
    KIAA1250   142    YSVYPIIWAAGRGHADIVHLLLQNGAKVNC    171  

SM00248: domain 5 of 11, from 175 to 204: score 36.2, E = 4.6e-06
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +G TpL +Aa++g+le+vk+Ll  gad++    
    KIAA1250   175    YGTTPLVWAARKGHLECVKHLLAMGADVDQ    204  

SM00248: domain 6 of 11, from 208 to 237: score 21.6, E = 0.11
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      + +T+L +A++ g+   vk++l++++++n+   
    KIAA1250   208    NSMTALIVAVKGGYTQSVKEILKRNPNVNL    237  

SM00248: domain 7 of 11, from 241 to 270: score 29.1, E = 0.00061
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      dG+T+L++A ++g+ e+v+ Lld+g  +n+   
    KIAA1250   241    DGNTALMIASKEGHTEIVQDLLDAGTYVNI    270  

SM00248: domain 8 of 11, from 274 to 303: score 28.1, E = 0.0012
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G+T L  A++ g++e+v++Ll+k adi++   
    KIAA1250   274    SGDTVLIGAVRGGHVEIVRALLQKYADIDI    303  

SM00248: domain 9 of 11, from 307 to 336: score 23.6, E = 0.028
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      d++T+L++A+e+gn  +v+ +l+ ++d ++   
    KIAA1250   307    DNKTALYWAVEKGNATMVRDILQCNPDTEI    336  

SM00248: domain 10 of 11, from 340 to 369: score 28.8, E = 0.00074
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      dG TpL  A +  n+evv+lLldkga + a   
    KIAA1250   340    DGETPLIKATKMRNIEVVELLLDKGAKVSA    369  

SM00248: domain 11 of 11, from 373 to 404: score 16.7, E = 3.3
                   *->dGrTpLHlAaengnlevvklLldkga..dina<-*
                       G+TpLH+A++  + ++++lLl++  ++ + +   
    KIAA1250   373    KGDTPLHIAIRGRSRKLAELLLRNPKdgRLLY    404  

//