hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-21351216/chunk_1/iprscan-20080501-21351216.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1250 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07693.4.ls KAP family P-loop domain 646.6 1.9e-191 1 PF07693.4.fs KAP family P-loop domain 644.5 8.1e-191 1 PF00023.20.ls Ankyrin repeat 353.8 2.6e-103 11 PF00023.20.fs Ankyrin repeat 332.9 5.2e-97 11 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00023.20.ls 1/11 43 75 .. 1 33 [] 45.7 1.5e-10 PF00023.20.fs 1/11 43 75 .. 1 33 [] 43.7 3.4e-11 PF00023.20.ls 2/11 76 108 .. 1 33 [] 31.3 3.2e-06 PF00023.20.fs 2/11 76 108 .. 1 33 [] 29.3 3.5e-07 PF00023.20.ls 3/11 109 141 .. 1 33 [] 41.4 2.8e-09 PF00023.20.fs 3/11 109 141 .. 1 33 [] 39.4 5.2e-10 PF00023.20.ls 4/11 142 174 .. 1 33 [] 28.2 2.7e-05 PF00023.20.fs 4/11 142 174 .. 1 33 [] 26.2 2.5e-06 PF00023.20.fs 5/11 175 207 .. 1 33 [] 31.8 7e-08 PF00023.20.ls 5/11 175 207 .. 1 33 [] 33.8 5.6e-07 PF00023.20.fs 6/11 208 240 .. 1 33 [] 20.9 7.6e-05 PF00023.20.ls 6/11 208 240 .. 1 33 [] 22.9 0.0011 PF00023.20.ls 7/11 241 273 .. 1 33 [] 46.1 1.1e-10 PF00023.20.fs 7/11 241 273 .. 1 33 [] 44.1 2.6e-11 PF00023.20.ls 8/11 274 306 .. 1 33 [] 26.6 8.2e-05 PF00023.20.fs 8/11 274 306 .. 1 33 [] 24.6 7.1e-06 PF00023.20.ls 9/11 307 339 .. 1 33 [] 25.0 0.00025 PF00023.20.fs 9/11 307 339 .. 1 33 [] 23.0 2e-05 PF00023.20.ls 10/11 340 372 .. 1 33 [] 37.4 4.5e-08 PF00023.20.fs 10/11 340 372 .. 1 33 [] 35.4 6.7e-09 PF00023.20.fs 11/11 373 396 .. 1 24 [. 14.5 0.0048 PF00023.20.ls 11/11 373 408 .. 1 33 [] 15.4 0.17 PF07693.4.fs 1/1 446 959 .. 1 513 [] 644.5 8.1e-191 PF07693.4.ls 1/1 446 959 .. 1 513 [] 646.6 1.9e-191 Alignments of top-scoring domains: PF00023.20.ls: domain 1 of 11, from 43 to 75: score 45.7, E = 1.5e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+TPL++Aa+ gnle+vk+L+++GA+ n+ d KIAA1250 43 CGQTPLMIAAEQGNLEIVKELIKNGANCNLEDL 75 PF00023.20.fs: domain 1 of 11, from 43 to 75: score 43.7, E = 3.4e-11 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+TPL++Aa+ gnle+vk+L+++GA+ n+ d KIAA1250 43 CGQTPLMIAAEQGNLEIVKELIKNGANCNLEDL 75 PF00023.20.ls: domain 2 of 11, from 76 to 108: score 31.3, E = 3.2e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* d +T+L A++ g++ +v++Ll++G +l ++d KIAA1250 76 DNWTALISASKEGHVHIVEELLKCGVNLEHRDM 108 PF00023.20.fs: domain 2 of 11, from 76 to 108: score 29.3, E = 3.5e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* d +T+L A++ g++ +v++Ll++G +l ++d KIAA1250 76 DNWTALISASKEGHVHIVEELLKCGVNLEHRDM 108 PF00023.20.ls: domain 3 of 11, from 109 to 141: score 41.4, E = 2.8e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+L++A+++g+++vv+lLls+GA++ ++ KIAA1250 109 GGWTALMWACYKGRTDVVELLLSHGANPSVTGL 141 PF00023.20.fs: domain 3 of 11, from 109 to 141: score 39.4, E = 5.2e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+L++A+++g+++vv+lLls+GA++ ++ KIAA1250 109 GGWTALMWACYKGRTDVVELLLSHGANPSVTGL 141 PF00023.20.ls: domain 4 of 11, from 142 to 174: score 28.2, E = 2.7e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + P+ +Aa rg++++v lLl++GA +n d+ KIAA1250 142 YSVYPIIWAAGRGHADIVHLLLQNGAKVNCSDK 174 PF00023.20.fs: domain 4 of 11, from 142 to 174: score 26.2, E = 2.5e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + P+ +Aa rg++++v lLl++GA +n d+ KIAA1250 142 YSVYPIIWAAGRGHADIVHLLLQNGAKVNCSDK 174 PF00023.20.fs: domain 5 of 11, from 175 to 207: score 31.8, E = 7e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G TPL +Aa++g+le+vk Ll GAd++ KIAA1250 175 YGTTPLVWAARKGHLECVKHLLAMGADVDQEGA 207 PF00023.20.ls: domain 5 of 11, from 175 to 207: score 33.8, E = 5.6e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G TPL +Aa++g+le+vk Ll GAd++ KIAA1250 175 YGTTPLVWAARKGHLECVKHLLAMGADVDQEGA 207 PF00023.20.fs: domain 6 of 11, from 208 to 240: score 20.9, E = 7.6e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + +T+L +A++ g+++ vk+ l++ ++n++d+ KIAA1250 208 NSMTALIVAVKGGYTQSVKEILKRNPNVNLTDK 240 PF00023.20.ls: domain 6 of 11, from 208 to 240: score 22.9, E = 0.0011 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + +T+L +A++ g+++ vk+ l++ ++n++d+ KIAA1250 208 NSMTALIVAVKGGYTQSVKEILKRNPNVNLTDK 240 PF00023.20.ls: domain 7 of 11, from 241 to 273: score 46.1, E = 1.1e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+T+L++A++ g++e+v++Ll++G +n+ d+ KIAA1250 241 DGNTALMIASKEGHTEIVQDLLDAGTYVNIPDR 273 PF00023.20.fs: domain 7 of 11, from 241 to 273: score 44.1, E = 2.6e-11 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+T+L++A++ g++e+v++Ll++G +n+ d+ KIAA1250 241 DGNTALMIASKEGHTEIVQDLLDAGTYVNIPDR 273 PF00023.20.ls: domain 8 of 11, from 274 to 306: score 26.6, E = 8.2e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T L A++ g++e+v+ Ll++ Ad++++ KIAA1250 274 SGDTVLIGAVRGGHVEIVRALLQKYADIDIRGQ 306 PF00023.20.fs: domain 8 of 11, from 274 to 306: score 24.6, E = 7.1e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T L A++ g++e+v+ Ll++ Ad++++ KIAA1250 274 SGDTVLIGAVRGGHVEIVRALLQKYADIDIRGQ 306 PF00023.20.ls: domain 9 of 11, from 307 to 339: score 25.0, E = 0.00025 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* d T+L +A+++gn+ +v++ l++ d + ++ KIAA1250 307 DNKTALYWAVEKGNATMVRDILQCNPDTEICTK 339 PF00023.20.fs: domain 9 of 11, from 307 to 339: score 23.0, E = 2e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* d T+L +A+++gn+ +v++ l++ d + ++ KIAA1250 307 DNKTALYWAVEKGNATMVRDILQCNPDTEICTK 339 PF00023.20.ls: domain 10 of 11, from 340 to 372: score 37.4, E = 4.5e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+TPL A ++ n+evv+lLl++GA + a+d+ KIAA1250 340 DGETPLIKATKMRNIEVVELLLDKGAKVSAVDK 372 PF00023.20.fs: domain 10 of 11, from 340 to 372: score 35.4, E = 6.7e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+TPL A ++ n+evv+lLl++GA + a+d+ KIAA1250 340 DGETPLIKATKMRNIEVVELLLDKGAKVSAVDK 372 PF00023.20.fs: domain 11 of 11, from 373 to 396: score 14.5, E = 0.0048 *->dGfTPLHlAalrgnlevvklLlsq<-* G+TPLH+A++ + ++++lLl + KIAA1250 373 KGDTPLHIAIRGRSRKLAELLLRN 396 PF00023.20.ls: domain 11 of 11, from 373 to 408: score 15.4, E = 0.17 *->dGfTPLHlAalrgnlevvklLls...qGAdlnaqdd<-* G+TPLH+A++ + ++++lLl +++ G l ++ KIAA1250 373 KGDTPLHIAIRGRSRKLAELLLRnpkDGRLLYRPNK 408 PF07693.4.fs: domain 1 of 1, from 446 to 959: score 644.5, E = 8.1e-191 *->rkpyaenlakllvepslveppivigiyGaWGsGKTsllnlledelke ++ y+++la++l+ep++ +ppi++g+y++WGsGK++ll++lede+k+ KIAA1250 446 YDLYSSALADILSEPTM-QPPICVGLYAQWGSGKSFLLKKLEDEMKT 491 fArdwleppi.lsFlvvLhilLliGtvvll.Twsv..vlgisisv.lLiL fA+++ ep++++s+l+v++ lLl+G ll ++v++ lgi++s+++L+L KIAA1250 492 FAGQQIEPLFqFSWLIVFLTLLLCGGLGLLfAFTVhpNLGIAVSLsFLAL 541 iYfl.vvVkfl.rr.rd.weWaysi.ngLaRklgRlrliLqvafchppea +Y++ +v++f++rr++++w+Wa++++++LaR++g+l+l+L+++f++ppe+ KIAA1250 542 LYIFfIVIYFGgRReGEsWNWAWVLsTRLARHIGYLELLLKLMFVNPPEL 591 psqdsqakpeefiivkfdpWlfsgqddlvasllatladaLeeeasalatk p+q++ a p++f++ +++++++ g++ +a+++atl+da+e+e+++lat+ KIAA1250 592 PEQTTKALPVRFLFTDYNRLSSVGGETSLAEMIATLSDACEREFGFLATR 641 lllgkkllslvigakigwkkkvalalaltglvalallvigagllavltig l++++k++ + ++k++ k+++l+ ++++l++++++++g+ lla ++++ KIAA1250 642 LFRVFKTEDTQGKKKWK--KTCCLPSFVIFLFIIGCIISGITLLAIFRVD 689 dveeeeeeeavnalkeasatlmGlliitiqhlwlkvt.slfnsqrkrlkr +vna+++++a+++Gl+ ++++w++v +sl+nsqrkrl+ KIAA1250 690 PK-----HLTVNAVLISIASVVGLAFVLNCRTWWQVLdSLLNSQRKRLHN 734 AarsehkLklrglkkklqkeieelrtdikkaLdeFt.lqkrivvvIDDLD Aa++ hkLk++g++k+l+ e+e l++ ++k++d+Ft++q+r+vv+ID+LD KIAA1250 735 AASKLHKLKSEGFMKVLKCEVE-LMARMAKTIDSFTqNQTRLVVIIDGLD 783 RcepeevvelLeavrllfdfphpnvvfILayDeeiikkAleknyggglse ce+++v+++L++vr+lf+ +++ I+a D++ii+kA+++n++++l++ KIAA1250 784 ACEQDKVLQMLDTVRVLFSK--GPFIAIFASDPHIIIKAINQNLNSVLRD 831 sgidgqdYLeKiIqvpfrLpplglrelrrylmtavlvdalergtssedrd s+i+g+dY+++i+++p+ L++ gl+++r++l t+ + + + s + KIAA1250 832 SNINGHDYMRNIVHLPVFLNSRGLSNARKFLVTS--ATNGDVPCSDTTGI 879 ee.lvnkalqrrLSargw.gk.ldesesvkstgrsnls.Lasnlqraddl +e+ ++ ++q++L + ++ ++++++++++t+r++++++ ++q+++dl KIAA1250 880 QEdADRRVSQNSL--GEMtKLgSKTALNRRDTYRRRQMqRTITRQMSFDL 927 niildtedYksdlnPRelkRliNalkilyrll<-* +++l ted++sd++P++++Rl+N +++++rll KIAA1250 928 TKLLVTEDWFSDISPQTMRRLLNIVSVTGRLL 959 PF07693.4.ls: domain 1 of 1, from 446 to 959: score 646.6, E = 1.9e-191 *->rkpyaenlakllvepslveppivigiyGaWGsGKTsllnlledelke ++ y+++la++l+ep++ +ppi++g+y++WGsGK++ll++lede+k+ KIAA1250 446 YDLYSSALADILSEPTM-QPPICVGLYAQWGSGKSFLLKKLEDEMKT 491 fArdwleppi.lsFlvvLhilLliGtvvll.Twsv..vlgisisv.lLiL fA+++ ep++++s+l+v++ lLl+G ll ++v++ lgi++s+++L+L KIAA1250 492 FAGQQIEPLFqFSWLIVFLTLLLCGGLGLLfAFTVhpNLGIAVSLsFLAL 541 iYfl.vvVkfl.rr.rd.weWaysi.ngLaRklgRlrliLqvafchppea +Y++ +v++f++rr++++w+Wa++++++LaR++g+l+l+L+++f++ppe+ KIAA1250 542 LYIFfIVIYFGgRReGEsWNWAWVLsTRLARHIGYLELLLKLMFVNPPEL 591 psqdsqakpeefiivkfdpWlfsgqddlvasllatladaLeeeasalatk p+q++ a p++f++ +++++++ g++ +a+++atl+da+e+e+++lat+ KIAA1250 592 PEQTTKALPVRFLFTDYNRLSSVGGETSLAEMIATLSDACEREFGFLATR 641 lllgkkllslvigakigwkkkvalalaltglvalallvigagllavltig l++++k++ + ++k++ k+++l+ ++++l++++++++g+ lla ++++ KIAA1250 642 LFRVFKTEDTQGKKKWK--KTCCLPSFVIFLFIIGCIISGITLLAIFRVD 689 dveeeeeeeavnalkeasatlmGlliitiqhlwlkvt.slfnsqrkrlkr +vna+++++a+++Gl+ ++++w++v +sl+nsqrkrl+ KIAA1250 690 PK-----HLTVNAVLISIASVVGLAFVLNCRTWWQVLdSLLNSQRKRLHN 734 AarsehkLklrglkkklqkeieelrtdikkaLdeFt.lqkrivvvIDDLD Aa++ hkLk++g++k+l+ e+e l++ ++k++d+Ft++q+r+vv+ID+LD KIAA1250 735 AASKLHKLKSEGFMKVLKCEVE-LMARMAKTIDSFTqNQTRLVVIIDGLD 783 RcepeevvelLeavrllfdfphpnvvfILayDeeiikkAleknyggglse ce+++v+++L++vr+lf+ +++ I+a D++ii+kA+++n++++l++ KIAA1250 784 ACEQDKVLQMLDTVRVLFSK--GPFIAIFASDPHIIIKAINQNLNSVLRD 831 sgidgqdYLeKiIqvpfrLpplglrelrrylmtavlvdalergtssedrd s+i+g+dY+++i+++p+ L++ gl+++r++l t+ + + + s + KIAA1250 832 SNINGHDYMRNIVHLPVFLNSRGLSNARKFLVTS--ATNGDVPCSDTTGI 879 ee.lvnkalqrrLSargw.gk.ldesesvkstgrsnls.Lasnlqraddl +e+ ++ ++q++L + ++ ++++++++++t+r++++++ ++q+++dl KIAA1250 880 QEdADRRVSQNSL--GEMtKLgSKTALNRRDTYRRRQMqRTITRQMSFDL 927 niildtedYksdlnPRelkRliNalkilyrll<-* +++l ted++sd++P++++Rl+N +++++rll KIAA1250 928 TKLLVTEDWFSDISPQTMRRLLNIVSVTGRLL 959 //