hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-21333087/chunk_1/iprscan-20080501-21333087.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1249 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00105 126.7 2.5e-33 1 SM00326 72.4 5.6e-17 1 SM00233 66.1 4.6e-15 1 SM00248 46.0 4.9e-09 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00233 1/1 145 238 .. 1 82 [] 66.1 4.6e-15 SM00105 1/1 259 382 .. 1 139 [] 126.7 2.5e-33 SM00248 1/2 420 452 .. 1 30 [] 20.7 0.21 SM00248 2/2 456 485 .. 1 30 [] 25.3 0.0083 SM00326 1/1 890 948 .. 1 58 [] 72.4 5.6e-17 Alignments of top-scoring domains: SM00233: domain 1 of 1, from 145 to 238: score 66.1, E = 4.6e-15 *->vikeGwLlkks...k.swkkryfvLfngvLlyyksk..kpkgsipLs +k+G+Llkks++ ++ w++r + ++ng L++ + +++ +++L KIAA1249 145 SEKKGYLLKKSdgiRkVWQRRKCSVKNGILTISHATsnRQPAKLNLL 191 gcsvre.p....cFeivt.drtlllqAeseeereeWvealqsaiaka<-* +c+v+++++++++F +++++rt+++qAe+e++ W++ l + ++a KIAA1249 192 TCQVKPnAedkkSFDLIShNRTYHFQAEDEQDYVAWISVLTNSKEEA 238 SM00105: domain 1 of 1, from 259 to 382: score 126.7, E = 2.5e-33 *->eealqlLRsikpgNkkCfDCGavpnPtWaSvnlGvflCieCSGiHRs ++ ++ +++++ gN C+DCG+ +PtW S nlG++ CieCSGiHR KIAA1249 259 KAIIEDVQRLP-GNDICCDCGS-SEPTWLSTNLGILTCIECSGIHRE 303 LfGvHiSkVnvRSltLDtWteeeLrllesckgGNenansfwesnlddfsl + GvHiS++ Sl LD+ eL l + ++GN+ +n++ e+nl+ +s KIAA1249 304 M-GVHISRI--QSLELDKLGTSELLLAK--NVGNNSFNDIMEANLPSPSP 348 kpkdsdaaasvKCeddrqkyesfiaaKYeeklf.rvdkesaee<-* kp++s+ d +++++i aKY++++f+r + +++ KIAA1249 349 KPTPSS---------DMTVRKEYITAKYVDHRFsRKTCSTSSA 382 SM00248: domain 1 of 2, from 420 to 452: score 20.7, E = 0.21 *->dGrTpLHlAaen...gnlevvklLldkgadina<-* G T+LHlA+++ ++ +l++v +L+++ +++++ KIAA1249 420 LGETALHLAVRTadqTSLHLVDFLVQNCGNLDK 452 SM00248: domain 2 of 2, from 456 to 485: score 25.3, E = 0.0083 *->dGrTpLHlAaengnlevvklLldkgadina<-* G+T LH++ ++ +e++klLl++++++++ KIAA1249 456 LGNTVLHYCSMYSKPECLKLLLRSKPTVDI 485 SM00326: domain 1 of 1, from 890 to 948: score 72.4, E = 5.6e-17 *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnr.tGke ++v+ +YD++a+n+dEL+F +G++i+v+ ++d++Ww G + ++ ++ KIAA1249 890 RRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGqPERK 936 GlfPsnYVeeie<-* G fP ++V ++ KIAA1249 937 GVFPVSFVHILS 948 //