hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21315392/chunk_1/iprscan-20080501-21315392.nocrc
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Query sequence: KIAA1248
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03096.5.ls Ndr family                                     617.9   8.4e-183   1
PF03096.5.fs Ndr family                                     615.9   3.3e-182   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03096.5.fs   1/1      37   315 ..     1   300 []   615.9 3.3e-182
PF03096.5.ls   1/1      37   315 ..     1   300 []   617.9 8.4e-183

Alignments of top-scoring domains:
PF03096.5.fs: domain 1 of 1, from 37 to 315: score 615.9, E = 3.3e-182
                   *->ehiietpcGsvhVtVyGdpkgrkkpvilTYHDlGlNHkSCFqglFns
                      +h++etp+Gsv++tVyG+pk+ k+p+ilTYHD+GlN+kSCFq+lF++
    KIAA1248    37    THSVETPYGSVTFTVYGTPKP-KRPAILTYHDVGLNYKSCFQPLFQF 82   

                   PesmqeilekFciyHVdaPGqedgAasfpegypyPSlddLadmlpaVLdh
                    e+mqei+++F+++HVdaPG+e+gA+ fp gy+yPSld+Ladm+p+VL++
    KIAA1248    83 -EDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCVLQY 131  

                   FslksvIGmGvGAGAYILaRFAlkhperVeGLVLinitpkaaGwiewfye
                   ++++++IG+GvGAGAYILaR+Al+hp++VeGLVLini+p+a+Gw++w+++
    KIAA1248   132 LNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDWAAH 181  

                   KlssklLkyvGmtdllkdlllaHkFgkeelsnevpnsdkekiVqeYRkll
                   Kl+       G+t+++++++l H+F++eels    ns+   ++q+YR+++
    KIAA1248   182 KLT-------GLTSSIPEMILGHLFSQEELSG---NSE---LIQKYRNII 218  

                   kerlNpkNlqlyleaynsRrDLtierkgleettravtLkcpvlLvVGdkS
                   ++++N +N++ly+++yn+RrDL++er+g+       tL+cpv+LvVGd++
    KIAA1248   219 THAPNLDNIELYWNSYNNRRDLNFERGGDI------TLRCPVMLVVGDQA 262  

                   PhvdavvecnskLdpkkttllkvadcGglVlqeqPgklteslklFlkGmG
                   Ph+davvecnskLdp++t++lk+ad+Gg+++ +qPgklte++k+Fl+GmG
    KIAA1248   263 PHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGMG 312  

                   ylp<-*
                   y++   
    KIAA1248   313 YMA    315  

PF03096.5.ls: domain 1 of 1, from 37 to 315: score 617.9, E = 8.4e-183
                   *->ehiietpcGsvhVtVyGdpkgrkkpvilTYHDlGlNHkSCFqglFns
                      +h++etp+Gsv++tVyG+pk+ k+p+ilTYHD+GlN+kSCFq+lF++
    KIAA1248    37    THSVETPYGSVTFTVYGTPKP-KRPAILTYHDVGLNYKSCFQPLFQF 82   

                   PesmqeilekFciyHVdaPGqedgAasfpegypyPSlddLadmlpaVLdh
                    e+mqei+++F+++HVdaPG+e+gA+ fp gy+yPSld+Ladm+p+VL++
    KIAA1248    83 -EDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCVLQY 131  

                   FslksvIGmGvGAGAYILaRFAlkhperVeGLVLinitpkaaGwiewfye
                   ++++++IG+GvGAGAYILaR+Al+hp++VeGLVLini+p+a+Gw++w+++
    KIAA1248   132 LNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDWAAH 181  

                   KlssklLkyvGmtdllkdlllaHkFgkeelsnevpnsdkekiVqeYRkll
                   Kl+       G+t+++++++l H+F++eels    ns+   ++q+YR+++
    KIAA1248   182 KLT-------GLTSSIPEMILGHLFSQEELSG---NSE---LIQKYRNII 218  

                   kerlNpkNlqlyleaynsRrDLtierkgleettravtLkcpvlLvVGdkS
                   ++++N +N++ly+++yn+RrDL++er+g+       tL+cpv+LvVGd++
    KIAA1248   219 THAPNLDNIELYWNSYNNRRDLNFERGGDI------TLRCPVMLVVGDQA 262  

                   PhvdavvecnskLdpkkttllkvadcGglVlqeqPgklteslklFlkGmG
                   Ph+davvecnskLdp++t++lk+ad+Gg+++ +qPgklte++k+Fl+GmG
    KIAA1248   263 PHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGMG 312  

                   ylp<-*
                   y++   
    KIAA1248   313 YMA    315  

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