# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh03309a.fasta.huge -Q ../query/KIAA1248.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1248, 368 aa
 vs ./tmplib.24314 library

1987137 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.5066+/-0.0048; mu= 8.7355+/- 0.327
 mean_var=80.6635+/-18.940, 0's: 0 Z-trim: 1  B-trim: 0 in 0/40
 Lambda= 0.142802

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1180  ( 360 res)   hf00665as1                  ( 360) 1353 288.1   5e-79


>>KIAA1180  ( 360 res)   hf00665as1                       (360 aa)
 initn: 1369 init1: 932 opt: 1353  Z-score: 1510.7  bits: 288.1 E(): 5e-79
Smith-Waterman score: 1464;  62.291% identity (81.006% similar) in 358 aa overlap (29-368:7-360)

               10        20        30         40        50         
KIAA12 RRDAAKRGEATMAELQEVQITEEKPLLPGQTPEAAK-THSVETPYGSVTFTVYGTPKPKR
                                   :. ::     :..::::: .  .. :.:: .:
KIAA11                       RRVPSLGKMPECWDGEHDIETPYGLLHVVIRGSPKGNR
                                     10        20        30        

      60        70        80        90       100       110         
KIAA12 PAILTYHDVGLNYKSCFQPLFQFEDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLD
       ::::::::::::.: ::. .:.::::::: ..::  ::::::.. ::  :: :::.::..
KIAA11 PAILTYHDVGLNHKLCFNTFFNFEDMQEITKHFVVCHVDAPGQQVGASQFPQGYQFPSME
       40        50        60        70        80        90        

     120       130       140       150       160       170         
KIAA12 QLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDWA
       ::: :.: :.:...:. .::.:::::::.::..::  :: ::::::.:::::.:::.:::
KIAA11 QLAAMLPSVVQHFGFKYVIGIGVGAGAYVLAKFALIFPDLVEGLVLVNIDPNGKGWIDWA
      100       110       120       130       140       150        

     180       190       200       210       220       230         
KIAA12 AHKLTGLTSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLDNIELYWNSYNNRRD
       : ::.::::..:. .:.:::::::: .:.::.:.::. : .. :  :..:.:: ::.:::
KIAA11 ATKLSGLTSTLPDTVLSHLFSQEELVNNTELVQSYRQQIGNVVNQANLQLFWNMYNSRRD
      160       170       180       190       200       210        

     240           250       260       270       280       290     
KIAA12 LNFERGGDI----TLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLT
       :...: : .    ::::::::::::.:: ::.::::::::::: :.::::::::: ::.:
KIAA11 LDINRPGTVPNAKTLRCPVMLVVGDNAPAEDGVVECNSKLDPTTTTFLKMADSGGLPQVT
      220       230       240       250       260       270        

         300       310                    320       330       340  
KIAA12 QPGKLTEAFKYFLQGMGYMA-------------SSCMTRLSRSRTASLTSAASVDGNRSR
       ::::::::::::::::::.:             :. ::::.::::::::::.::::.: .
KIAA11 QPGKLTEAFKYFLQGMGYIAYLKDRRLSGGAVPSASMTRLARSRTASLTSASSVDGSRPQ
      280       290       300       310       320       330        

            350       360        
KIAA12 SRTLSQSSESGTLSSGPPGHTMEVSC
       . : :.::: :    :  .:::::::
KIAA11 ACTHSESSE-GL---GQVNHTMEVSC
      340           350       360




368 residues in 1 query   sequences
1987137 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:14:42 2008 done: Thu Dec 18 15:14:42 2008
 Total Scan time:  0.370 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]