hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /db/iprscan/data/smart.HMMs.bin
Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-21283427/chunk_1/iprscan-20080501-21283427.nocrc
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Query sequence: KIAA1246
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SM00369 106.1 4e-27 6
SM00408 56.6 3.1e-12 1
SM00409 37.0 2.6e-06 1
SM00082 28.3 0.001 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SM00369 1/6 118 141 .. 1 24 [] 13.8 8.6
SM00369 2/6 142 165 .. 1 24 [] 24.7 0.013
SM00369 3/6 166 189 .. 1 24 [] 23.5 0.03
SM00369 4/6 191 214 .. 1 24 [] 7.4 52
SM00369 5/6 215 238 .. 1 24 [] 24.2 0.018
SM00369 6/6 239 263 .. 1 24 [] 12.5 12
SM00082 1/1 285 330 .. 1 55 [] 28.3 0.001
SM00409 1/1 338 420 .. 1 58 [] 37.0 2.6e-06
SM00408 1/1 344 409 .. 1 56 [] 56.6 3.1e-12
Alignments of top-scoring domains:
SM00369: domain 1 of 6, from 118 to 141: score 13.8, E = 8.6
*->LpnLreLdLsnNqLtsLPpgaFqg<-*
++ L L Ls+N ++++ p F +
KIAA1246 118 MTGLVDLTLSRNTISHIQPFSFLD 141
SM00369: domain 2 of 6, from 142 to 165: score 24.7, E = 0.013
*->LpnLreLdLsnNqLtsLPpgaFqg<-*
L +Lr+L+L++N+L sL +++++g
KIAA1246 142 LESLRSLHLDSNRLPSLGEDTLRG 165
SM00369: domain 3 of 6, from 166 to 189: score 23.5, E = 0.03
*->LpnLreLdLsnNqLtsLPpgaFqg<-*
L+nL++L +nNqL + ++aF++
KIAA1246 166 LVNLQHLIVNNNQLGGIADEAFED 189
SM00369: domain 4 of 6, from 191 to 214: score 7.4, E = 52
*->LpnLreLdLsnNqLtsLPpgaFqg<-*
L L+ LdLs+N+L LP + +
KIAA1246 191 LLTLEDLDLSYNNLHGLPWDSVRR 214
SM00369: domain 5 of 6, from 215 to 238: score 24.2, E = 0.018
*->LpnLreLdLsnNqLtsLPpgaFqg<-*
++nL L+L++N L ++ +g+F++
KIAA1246 215 MVNLHQLSLDHNLLDHIAEGTFAD 238
SM00369: domain 6 of 6, from 239 to 263: score 12.5, E = 12
*->LpnLreLdLsnNqLtsLPpg.aFqg<-*
L +L +LdL +N+L+ LPp+++F+
KIAA1246 239 LQKLARLDLTSNRLQKLPPDpIFAR 263
SM00082: domain 1 of 1, from 285 to 330: score 28.3, E = 0.001
*->NPfnCDCeLrwLlrwleaqnnealqdpvsslrCasPeslrGqpllll
NP++C+CeL+wL+r+ ++ d +C sP+ l+G + +
KIAA1246 285 NPLHCNCELLWLRRLERD-------DD--LETCGSPGGLKG-RYFWH 321
lp.sefsCp<-*
+++ ef+C+
KIAA1246 322 VReEEFVCE 330
SM00409: domain 1 of 1, from 338 to 420: score 37.0, E = 2.6e-06
*->pp.vtvkeGesvtLtC.as.....titWy..................
+++v eG+ +tL+C+a +++++ i+W ++++ ++++++ ++
KIAA1246 338 THkLLVLEGQAATLKCkAIgdpspLIHWVapddrlvgnssrtavydn 384
..LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
++L I t +Ds G +tC a + +g+a++ +++++
KIAA1246 385 gtLDIfITTSQDS---GAFTCIAAnaAGEATA--MVEVSIV 420
SM00408: domain 1 of 1, from 344 to 409: score 56.6, E = 3.1e-12
*->leGqsVtLtCpasgdpvpnItWlk.gkplp.........sgstLtik
leGq++tL+C+a gdp p I+W+ ++ +l ++++++ +++tL i
KIAA1246 344 LEGQAATLKCKAIGDPSPLIHWVApDDRLVgnssrtavyDNGTLDIF 390
nvsleDsGlYtCvArNsvg<-*
+ DsG tC+A N++g
KIAA1246 391 ITTSQDSGAFTCIAANAAG 409
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