hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21283427/chunk_1/iprscan-20080501-21283427.nocrc
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Query sequence: KIAA1246
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00369                                                 106.1      4e-27   6
SM00408                                                  56.6    3.1e-12   1
SM00409                                                  37.0    2.6e-06   1
SM00082                                                  28.3      0.001   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00369     1/6     118   141 ..     1    24 []    13.8      8.6
SM00369     2/6     142   165 ..     1    24 []    24.7    0.013
SM00369     3/6     166   189 ..     1    24 []    23.5     0.03
SM00369     4/6     191   214 ..     1    24 []     7.4       52
SM00369     5/6     215   238 ..     1    24 []    24.2    0.018
SM00369     6/6     239   263 ..     1    24 []    12.5       12
SM00082     1/1     285   330 ..     1    55 []    28.3    0.001
SM00409     1/1     338   420 ..     1    58 []    37.0  2.6e-06
SM00408     1/1     344   409 ..     1    56 []    56.6  3.1e-12

Alignments of top-scoring domains:
SM00369: domain 1 of 6, from 118 to 141: score 13.8, E = 8.6
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      ++ L  L Ls+N ++++ p  F +   
    KIAA1246   118    MTGLVDLTLSRNTISHIQPFSFLD    141  

SM00369: domain 2 of 6, from 142 to 165: score 24.7, E = 0.013
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L +Lr+L+L++N+L sL +++++g   
    KIAA1246   142    LESLRSLHLDSNRLPSLGEDTLRG    165  

SM00369: domain 3 of 6, from 166 to 189: score 23.5, E = 0.03
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L+nL++L  +nNqL  + ++aF++   
    KIAA1246   166    LVNLQHLIVNNNQLGGIADEAFED    189  

SM00369: domain 4 of 6, from 191 to 214: score 7.4, E = 52
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L  L+ LdLs+N+L  LP +  +    
    KIAA1246   191    LLTLEDLDLSYNNLHGLPWDSVRR    214  

SM00369: domain 5 of 6, from 215 to 238: score 24.2, E = 0.018
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      ++nL  L+L++N L ++ +g+F++   
    KIAA1246   215    MVNLHQLSLDHNLLDHIAEGTFAD    238  

SM00369: domain 6 of 6, from 239 to 263: score 12.5, E = 12
                   *->LpnLreLdLsnNqLtsLPpg.aFqg<-*
                      L +L +LdL +N+L+ LPp+++F+    
    KIAA1246   239    LQKLARLDLTSNRLQKLPPDpIFAR    263  

SM00082: domain 1 of 1, from 285 to 330: score 28.3, E = 0.001
                   *->NPfnCDCeLrwLlrwleaqnnealqdpvsslrCasPeslrGqpllll
                      NP++C+CeL+wL+r+ ++       d     +C sP+ l+G + +  
    KIAA1246   285    NPLHCNCELLWLRRLERD-------DD--LETCGSPGGLKG-RYFWH 321  

                   lp.sefsCp<-*
                   +++ ef+C+   
    KIAA1246   322 VReEEFVCE    330  

SM00409: domain 1 of 1, from 338 to 420: score 37.0, E = 2.6e-06
                   *->pp.vtvkeGesvtLtC.as.....titWy..................
                        +++v eG+ +tL+C+a +++++ i+W  ++++  ++++++   ++
    KIAA1246   338    THkLLVLEGQAATLKCkAIgdpspLIHWVapddrlvgnssrtavydn 384  

                   ..LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
                   ++L I   t +Ds   G +tC a + +g+a++   +++++    
    KIAA1246   385 gtLDIfITTSQDS---GAFTCIAAnaAGEATA--MVEVSIV    420  

SM00408: domain 1 of 1, from 344 to 409: score 56.6, E = 3.1e-12
                   *->leGqsVtLtCpasgdpvpnItWlk.gkplp.........sgstLtik
                      leGq++tL+C+a gdp p I+W+ ++ +l ++++++   +++tL i 
    KIAA1246   344    LEGQAATLKCKAIGDPSPLIHWVApDDRLVgnssrtavyDNGTLDIF 390  

                   nvsleDsGlYtCvArNsvg<-*
                     +  DsG  tC+A N++g   
    KIAA1246   391 ITTSQDSGAFTCIAANAAG    409  

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