hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-21283427/chunk_1/iprscan-20080501-21283427.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1246 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00560.23.ls Leucine Rich Repeat 80.8 3.8e-21 7 PF00560.23.fs Leucine Rich Repeat 67.8 1.7e-17 7 PF07679.6.fs Immunoglobulin I-set domain 56.9 5.5e-16 1 PF07679.6.ls Immunoglobulin I-set domain 58.8 1.7e-14 1 PF00041.11.fs Fibronectin type III domain 27.6 2.7e-07 1 PF00047.15.fs Immunoglobulin domain 27.4 9.1e-07 1 PF00047.15.ls Immunoglobulin domain 29.3 1.3e-05 1 PF00041.11.ls Fibronectin type III domain 28.5 2.2e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00560.23.ls 2/7 120 140 .. 1 24 [] 10.0 3.5 PF00560.23.ls 3/7 144 166 .. 1 24 [] 13.6 0.67 PF00560.23.fs 3/7 144 166 .. 1 24 [] 11.7 0.037 PF00560.23.fs 4/7 168 190 .. 1 24 [] 12.7 0.02 PF00560.23.ls 4/7 168 190 .. 1 24 [] 14.6 0.34 PF00560.23.ls 5/7 193 215 .. 1 24 [] 12.4 1.2 PF00560.23.fs 6/7 217 239 .. 1 24 [] 11.9 0.032 PF00560.23.ls 6/7 217 239 .. 1 24 [] 13.8 0.58 PF00560.23.ls 7/7 241 263 .. 1 24 [] 9.0 5.4 PF07679.6.fs 1/1 332 419 .. 1 96 [] 56.9 5.5e-16 PF07679.6.ls 1/1 332 419 .. 1 96 [] 58.8 1.7e-14 PF00047.15.ls 1/1 346 404 .. 1 65 [] 29.3 1.3e-05 PF00047.15.fs 1/1 346 404 .. 1 65 [] 27.4 9.1e-07 PF00041.11.ls 1/1 461 543 .. 1 84 [] 28.5 2.2e-05 PF00041.11.fs 1/1 461 536 .. 1 75 [. 27.6 2.7e-07 Alignments of top-scoring domains: PF00560.23.ls: domain 2 of 7, from 120 to 140: score 10.0, E = 3.5 *->nLeeLdLsgCNpsltgslpssl.nl<-* L L Ls+ N ++ ++++ ++ l KIAA1246 120 GLVDLTLSR-N-TIS-HIQP-FsFL 140 PF00560.23.ls: domain 3 of 7, from 144 to 166: score 13.6, E = 0.67 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L++L+L++ N +l +sl +++l++l KIAA1246 144 SLRSLHLDS-N-RL-PSLGEDtLrGL 166 PF00560.23.fs: domain 3 of 7, from 144 to 166: score 11.7, E = 0.037 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L++L+L++ N +l +sl +++l++l KIAA1246 144 SLRSLHLDS-N-RL-PSLGEDtLrGL 166 PF00560.23.fs: domain 4 of 7, from 168 to 190: score 12.7, E = 0.02 *->nLeeLdLsgCNpsltgslpss.l.nl<-* nL++L +++ N +l g +++++++++ KIAA1246 168 NLQHLIVNN-N-QL-GGIADEaFeDF 190 PF00560.23.ls: domain 4 of 7, from 168 to 190: score 14.6, E = 0.34 *->nLeeLdLsgCNpsltgslpss.l.nl<-* nL++L +++ N +l g +++++++++ KIAA1246 168 NLQHLIVNN-N-QL-GGIADEaFeDF 190 PF00560.23.ls: domain 5 of 7, from 193 to 215: score 12.4, E = 1.2 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +Le LdLs+ N +l lp ++++ + KIAA1246 193 TLEDLDLSY-N-NLH-GLPWDsVrRM 215 PF00560.23.fs: domain 6 of 7, from 217 to 239: score 11.9, E = 0.032 *->nLeeLdLsgCNpsltgslpss.l.nl<-* nL L+L++ N l ++++++++ +l KIAA1246 217 NLHQLSLDH-N-LL-DHIAEGtFaDL 239 PF00560.23.ls: domain 6 of 7, from 217 to 239: score 13.8, E = 0.58 *->nLeeLdLsgCNpsltgslpss.l.nl<-* nL L+L++ N l ++++++++ +l KIAA1246 217 NLHQLSLDH-N-LL-DHIAEGtFaDL 239 PF00560.23.ls: domain 7 of 7, from 241 to 263: score 9.0, E = 5.4 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L LdL + N +l+ +lp++++ KIAA1246 241 KLARLDLTS-N-RLQ-KLPPDpIfAR 263 PF07679.6.fs: domain 1 of 1, from 332 to 419: score 56.9, E = 5.5e-16 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKd.Gqplssvll P +tq+ + + V eG++a++ Ck++G+P P + W +++ + + KIAA1246 332 PLITQHTHKLLVLEGQAATLKCKAIGDPSPLIHWVAPdDRLVGN--- 375 psdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV s+r v +g tL I ++ DsG tC+A N aGea+a +e+ + KIAA1246 376 -SSRTAVYDNG-----TLDIFITTSQDSGAFTCIAANAAGEATAMVEVSI 419 <-* KIAA1246 - - PF07679.6.ls: domain 1 of 1, from 332 to 419: score 58.8, E = 1.7e-14 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKd.Gqplssvll P +tq+ + + V eG++a++ Ck++G+P P + W +++ + + KIAA1246 332 PLITQHTHKLLVLEGQAATLKCKAIGDPSPLIHWVAPdDRLVGN--- 375 psdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV s+r v +g tL I ++ DsG tC+A N aGea+a +e+ + KIAA1246 376 -SSRTAVYDNG-----TLDIFITTSQDSGAFTCIAANAAGEATAMVEVSI 419 <-* KIAA1246 - - PF00047.15.ls: domain 1 of 1, from 346 to 404: score 29.3, E = 1.3e-05 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ +tL C + g+p++ ++W + +l + + t + +ng+ KIAA1246 346 GQAATLKCKA--IGDPSPLIHWVAPDDrLVgNSSRTAVYDNGT---- 386 tsLtitnvtpeDggtYtCvv<-* L i +t++D+g +tC + KIAA1246 387 --LDIFITTSQDSGAFTCIA 404 PF00047.15.fs: domain 1 of 1, from 346 to 404: score 27.4, E = 9.1e-07 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ +tL C + g+p++ ++W + +l + + t + +ng+ KIAA1246 346 GQAATLKCKA--IGDPSPLIHWVAPDDrLVgNSSRTAVYDNGT---- 386 tsLtitnvtpeDggtYtCvv<-* L i +t++D+g +tC + KIAA1246 387 --LDIFITTSQDSGAFTCIA 404 PF00041.11.ls: domain 1 of 1, from 461 to 543: score 28.5, E = 2.2e-05 *->P.saP.tnltvtdvtstsltlsWspPtgngpitgYevtyRqpkngge P+s+P++ + v++vt+ts+ + Ws ++ + Y+++y +++++ KIAA1246 461 PkSPPeRAVLVSEVTTTSALVKWSVSKSAPRVKMYQLQYNCSDDEV- 506 wkeltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-* +++p + +++++L+ gt Y ++V A ++ + KIAA1246 507 LIYRMIPASNKAFVVNNLVSGTGYDLCVLAMWDD--TAT 543 PF00041.11.fs: domain 1 of 1, from 461 to 536: score 27.6, E = 2.7e-07 *->P.saP.tnltvtdvtstsltlsWspPtgngpitgYevtyRqpkngge P+s+P++ + v++vt+ts+ + Ws ++ + Y+++y +++++ KIAA1246 461 PkSPPeRAVLVSEVTTTSALVKWSVSKSAPRVKMYQLQYNCSDDEV- 506 wkeltvpgtttsytltgLkPgteYtvrVqA<-* +++p + +++++L+ gt Y ++V A KIAA1246 507 LIYRMIPASNKAFVVNNLVSGTGYDLCVLA 536 //