hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21250991/chunk_1/iprscan-20080501-21250991.nocrc
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Query sequence: KIAA1244
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00222                                                 213.4    1.9e-59   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00222    1/1     281   493 ..     1   226 []   213.4  1.9e-59

Alignments of top-scoring domains:
SM00222: domain 1 of 1, from 281 to 493: score 213.4, E = 1.9e-59
                   *->sknrkkllsegikkfnqkPkkGiqfLqekgflakevDdspqevAkfl
                      s++++++ s++++++++++++++++++++++ a e+D+ + +v+++ 
    KIAA1244   281    SYGSRYSESNFSVDDQDLSRTEFDSCDQYSMAA-EKDSGRSDVSDIG 326  

                   ydseS.adadeseteglnkkaiGdyLgeshdefnrlvLhafvdlfdFsgk
                   +d++S a     ++e++ ++++G++    ++ + +l L ++++ +++s++
    KIAA1244   327 SDNCSlA-----DEEQTPRDCLGHRSL--RTAALSLKLLKNQEADQHSAR 369  

                   dldeALRefLesfrLPGEaQkIDRlleaFserYcecNpgvfskagkslsk
                    ++++L  +L +++   + +++D++l++F++++c  +++++ ++g+s+++
    KIAA1244   370 LFIQSLEGLLPRLLSLSNVEEVDTALQNFASTFCSGMMHSPGFDGNSSLS 419  

                   iqqllnaDaaYvLaYSlIMLNTDLHnpnvkkskakdiLvKMtkedFikNl
                   +q+l+naD+ Y++a++ ++LN++L + ++++  ++++L++  ++dF+k++
    KIAA1244   420 FQMLMNADSLYTAAHCALLLNLKLSHGDYYR--KRPTLAPGVMKDFMKQV 467  

                   rginkeiddgedlprefLeelYdsIknnei<-*
                   + ++    +++ ++++++eelY+++ ++++   
    KIAA1244   468 QTSG----VLMVFSQAWIEELYHQVLDRNM    493  

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