hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21250991/chunk_1/iprscan-20080501-21250991.nocrc
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Query sequence: KIAA1244
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF09324.1.fs Domain of unknown function (DUF1981)            46.6    1.6e-12   1
PF09324.1.ls Domain of unknown function (DUF1981)            25.6    3.3e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF09324.1.ls   1/1     938  1014 ..     1    88 []    25.6  3.3e-07
PF09324.1.fs   1/1     943   998 ..    10    66 ..    46.6  1.6e-12

Alignments of top-scoring domains:
PF09324.1.ls: domain 1 of 1, from 938 to 1014: score 25.6, E = 3.3e-07
                   *->mkFLekeELanfkFQkdFLkPFEyImqnsnnqsvevkElvLrClsQm
                          +  E ++f+F+  + +PFE Im     ++++v+++v+ ++ ++
    KIAA1244   938    ----DWNEPPHFHFNEALFRPFERIM-QLELCDEDVQDQVVTSIGEL 979  

                   ilskadnIkSGWktiFgvltlAakdesesivklAfqiid.qi<-*
                   ++++++ I SGW+++F+ l  +   ++        ++ + ++   
    KIAA1244   980 VEVCSTQIQSGWRPLFSALETVHGGNK-------SEMKEyLV    1014 

PF09324.1.fs: domain 1 of 1, from 943 to 998: score 46.6, E = 1.6e-12
                   *->anfkFQkdFLkPFEyImqnsnnqsvevkElvLrClsQmilskadnIk
                      ++f+F+  + +PFE Im     ++++v+++v+ ++ ++++++++ I 
    KIAA1244   943    PHFHFNEALFRPFERIM-QLELCDEDVQDQVVTSIGELVEVCSTQIQ 988  

                   SGWktiFgvl<-*
                   SGW+++F+ l   
    KIAA1244   989 SGWRPLFSAL    998  

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