# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/pf00817.fasta.huge -Q ../query/KIAA1243.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1243, 828 aa vs ./tmplib.24314 library 1986677 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 11.1806+/-0.0104; mu= -11.8470+/- 0.704 mean_var=444.8459+/-105.821, 0's: 0 Z-trim: 3 B-trim: 0 in 0/40 Lambda= 0.060809 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1438 ( 1075 res) hk07374s1 (1075) 540 62.2 3.5e-10 >>KIAA1438 ( 1075 res) hk07374s1 (1075 aa) initn: 1256 init1: 312 opt: 540 Z-score: 274.6 bits: 62.2 E(): 3.5e-10 Smith-Waterman score: 1482; 38.407% identity (61.710% similar) in 854 aa overlap (2-828:349-1072) 10 20 30 KIAA12 GPALVKQSHPKNPNDK-HRSKKCKDPKPRVK :.:.:::.::. ..: .:::: :. ::.:: KIAA14 FLAEQPPLPPPPLLPPSLTNGTTIPTAKSTPTLIKQSQPKSASEKSQRSKKAKELKPKVK 320 330 340 350 360 370 40 50 60 70 80 KIAA12 KLKYHQYIPPDQKGEKNEPQMDSNYARLLQQQQLFLQLQILSQQKQ-HYNYQTILPAPFK ::::::::::::: ... : :::.::..:::::::::::::.::.: :.:::.::::: : KIAA14 KLKYHQYIPPDQKQDRGAPPMDSSYAKILQQQQLFLQLQILNQQQQQHHNYQAILPAPPK 380 390 400 410 420 430 90 100 110 120 130 KIAA12 PLNDKNSNSG----------NSALNNATPNT---PRQNTSTPVRKPGPLPSSLDDLKVSE .. ..:: ::. ....:. :::... . ::: ::..:::.::.: KIAA14 SAGEALGSSGTPPVRSLSTTNSSSSSGAPGPCGLARQNSTSLTGKPGALPANLDDMKVAE 440 450 460 470 480 490 140 150 160 170 180 190 KIAA12 LKTELKLRGLPVSGTKPDLIERLKPYQEVNSSGLAAGGIVAVSSSAIVTSNPEVTVALPV :: :::::.::::::: .:::::. ::. : . :. : ....:. . ::.::.:. KIAA14 LKQELKLRSLPVSGTKTELIERLRAYQDQISP--VPGAPKAPAATSILHKAGEVVVAFPA 500 510 520 530 540 550 200 210 220 230 240 250 KIAA12 TTLHN---TVTSSVSTLKAELPPTGTSNATRVENVHSPLPISPSPSEQSSLSTDDTNMA- . : . :..... .. . ...:.... .. : :.::.:::.: ::: : : . KIAA14 ARLSTGPALVAAGLAPAEVVVATVASSGVVKFGSTGSTPPVSPTPSERSLLSTGDENSTP 560 570 580 590 600 610 260 270 280 290 300 KIAA12 -DTFTEIMTMMSP-SQF-LSSSPLRMTNNEDSLSPTSSTLS---NLELDAAEKDRKLQEK ::: :..: :: .:. :..:::.. .:.. : :: ::.. .::. :::: KIAA14 GDTFGEMVT--SPLTQLTLQASPLQILVKEEGPRAGSCCLSPGGRAELEGRDKDQMLQEK 620 630 640 650 660 670 310 320 330 340 350 360 KIAA12 EKQIEELKRKLEQEQKLVEVLKMQLEVEKRGQQQRPLEAQPSAPGHSVKSDQKHGSLGSS .:::: : : :.:.:.::: ::.::: :::.:: : ::. ::. KIAA14 DKQIEALTRMLRQKQQLVERLKLQLEQEKRAQQPAP------APA----------PLGTP 680 690 700 710 370 380 390 400 410 420 KIAA12 IKDEASLPDCSSSRQPIPVASHAVGQPVSTGGQTLVAKKAVVIKQEVPVGQAEQQSVVSQ .:.: :. .:. :.::. : : . ... . . . ::. : : KIAA14 VKQENSFSSCQLSQQPLGPA-HPFNPSLAAPATNHIDPCAVA-----P-G---------- 720 730 740 750 760 430 440 450 460 470 480 KIAA12 FYVSSQGQPPPAVVAQPQALLTTQTAQLLLPVSIQGSSVTSVQLPVGSLKLQTSPQAGMQ ::.::.. .:: : :. KIAA14 ---------PPSVVVKQEAL-------------------------------QPEPEP--V 770 490 500 510 520 530 540 KIAA12 TQPQIATAAQIPTAALASGLAPTVPQTQDTFPQHVLSQPQQVRKVFTNSASSNTVLPYQR ::. . : :. : .:.:: . :..: . ::. : ...:.: : KIAA14 PAPQLLLGPQGPS--LIKGVAPPTLITDSTGTHLVLT-------VTNKNADS----PGLS 780 790 800 810 820 550 560 570 580 590 600 KIAA12 HPAPAVQQPFINKASNSVLQSRNAPLPSLQNGPNTPNKPSSPPPPQQFVVQHSLFGSPVA .: ::: : . :: :: : . : .: :::.:.. KIAA14 SGSP--QQP-------SSQPGSPAPAPSAQMDLEHPLQP--------------LFGTPTS 830 840 850 860 610 620 630 640 650 660 KIAA12 KTK-DPPRYEEAIKQTRSTQAPLPEISNAHSQQMDDLFDILIKSGEISLPIKEEPSPISK : .:: ::::. .: : . ... ::::::::::::.::::: .:: :: .: KIAA14 LLKKEPPGYEEAM-----SQQPKQQENGSSSQQMDDLFDILIQSGEISADFKEPPSLPGK 870 880 890 900 910 670 680 690 700 710 720 KIAA12 MRPVTASITTMPVNTVVSRPPPQVQMAPPVSLEPMGSLSASLENQLEAFLDGTLPSANEI .: .. :. ...: :.... : .. : :: :: ..:: ::. :.. . KIAA14 EKPSPKTVCGSPL---AAQPSPSAEL-PQAAPPPPGS--PSLPGRLEDFLE----SSTGL 920 930 940 950 960 730 740 750 760 770 780 KIAA12 PPLQSSSEDREPFSLIEDLQNDLLSHSGMLDHSHSPMETSETQFAA-GTPCLSLDLSDSN : : :. . ::.:::.::....:: ...::: :::.::: .:. . ..:::.:.. KIAA14 PLLTSGHDGPEPLSLIDDLHSQMLSSTAILDHPPSPMDTSELHFVPEPSSTMGLDLADGH 970 980 990 1000 1010 1020 790 800 810 820 KIAA12 LDNMEWLDITMPNSSSGLTPLSTTAPSMFSADFLDPQDLPLPWD ::.:.::... . .:.::::::::.::.:::: .:: : :: KIAA14 LDSMDWLELSSGGPVLSLAPLSTTAPSLFSTDFLDGHDLQLHWDSCL 1030 1040 1050 1060 1070 828 residues in 1 query sequences 1986677 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:14:30 2008 done: Thu Dec 18 15:14:31 2008 Total Scan time: 0.620 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]