hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21215006/chunk_1/iprscan-20080501-21215006.nocrc
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Query sequence: KIAA1242
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                 159.3    3.9e-43   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/6     229   268 ..     1    46 []    24.0    0.021
SM00320    2/6     271   308 ..     1    46 []    19.0     0.49
SM00320    3/6     313   352 ..     1    46 []    42.2  6.9e-08
SM00320    4/6     355   397 ..     1    46 []    29.4   0.0005
SM00320    5/6     400   440 ..     1    46 []     7.3       34
SM00320    6/6     443   482 ..     1    46 []    37.4  1.9e-06

Alignments of top-scoring domains:
SM00320: domain 1 of 6, from 229 to 268: score 24.0, E = 0.021
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + + l+ l+   +  +Vtsv +s  g      nl+a+g + g + +W
    KIAA1242   229    QvTRLCDLSVEGD--SVTSVGWSERG------NLVAVGThKGFVQIW 267  

                   d<-*
                   d   
    KIAA1242   268 D    268  

SM00320: domain 2 of 6, from 271 to 308: score 19.0, E = 0.49
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +k l+ l+gHt+  +V ++a++          +l sgs+D+ i   
    KIAA1242   271    AgKKLSMLEGHTA--RVGALAWNAE--------QLSSGSrDRMILQR 307  

                   d<-*
                   d   
    KIAA1242   308 D    308  

SM00320: domain 3 of 6, from 313 to 352: score 42.2, E = 6.9e-08
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + +  r l+gH++  +V+++++s d+      +llasg++D+++ +W
    KIAA1242   313    PlQSERRLQGHRQ--EVCGLKWSTDH------QLLASGGnDNKLLVW 351  

                   d<-*
                   +   
    KIAA1242   352 N    352  

SM00320: domain 4 of 6, from 355 to 397: score 29.4, E = 0.0005
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs...Dgtir
                      + ++++ ++ H +  +V ++a+sp+        llasg+++ D++ir
    KIAA1242   355    SlSPVQQYTEHLA--AVKAIAWSPHQ-----HGLLASGGgtaDRCIR 394  

                   lWd<-*
                   +W+   
    KIAA1242   395 FWN    397  

SM00320: domain 5 of 6, from 400 to 440: score 7.3, E = 34
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.Dgt..ir
                      t+++l+ ++   +   V+ +a+s +       n l+s  + ++++i 
    KIAA1242   400    TgQPLQCID-TGS--QVCNLAWSKHA------NELVSTHgYSQnqIL 437  

                   lWd<-*
                   +W+   
    KIAA1242   438 VWK    440  

SM00320: domain 6 of 6, from 443 to 482: score 37.4, E = 1.9e-06
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + +++++l+gH+   +V+ +a spdg      + +++g +D t+r+W
    KIAA1242   443    SlTQVAKLTGHSY--RVLYLAMSPDG------EAIVTGAgDETLRFW 481  

                   d<-*
                   +   
    KIAA1242   482 N    482  

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