hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21215006/chunk_1/iprscan-20080501-21215006.nocrc
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Query sequence: KIAA1242
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.ls WD domain, G-beta repeat                       119.9    6.7e-33   5
PF00400.22.fs WD domain, G-beta repeat                       113.0    7.1e-31   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.fs   1/6     230   268 ..     1    38 []    12.8    0.012
PF00400.22.ls   2/5     272   308 ..     1    38 []    23.6  0.00065
PF00400.22.fs   2/6     272   308 ..     1    38 []    21.7  3.9e-05
PF00400.22.ls   3/5     314   352 ..     1    38 []    35.1  2.2e-07
PF00400.22.fs   3/6     314   352 ..     1    38 []    33.1  2.3e-08
PF00400.22.fs   4/6     356   386 ..     1    29 [.    14.1   0.0054
PF00400.22.ls   5/5     444   482 ..     1    38 []    30.0  7.9e-06
PF00400.22.fs   6/6     444   482 ..     1    38 []    28.0  6.4e-07

Alignments of top-scoring domains:
PF00400.22.fs: domain 1 of 6, from 230 to 268: score 12.8, E = 0.012
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       + +  l+   ++Vt+v +s   g+l+a g + g + iWd   
    KIAA1242   230    VTRLcDLsVEGDSVTSVGWSER-GNLVAVGTHKGFVQIWD    268  

PF00400.22.ls: domain 2 of 5, from 272 to 308: score 23.6, E = 0.00065
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g+ ++ l+gHt+ V ++a++ +   +l sgSrD+ i   d   
    KIAA1242   272    GKKLsMLeGHTARVGALAWNAE---QLSSGSRDRMILQRD    308  

PF00400.22.fs: domain 2 of 6, from 272 to 308: score 21.7, E = 3.9e-05
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g+ ++ l+gHt+ V ++a++ +   +l sgSrD+ i   d   
    KIAA1242   272    GKKLsMLeGHTARVGALAWNAE---QLSSGSRDRMILQRD    308  

PF00400.22.ls: domain 3 of 5, from 314 to 352: score 35.1, E = 2.2e-07
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       +  + l+gH   V+ +++s d  +llasg+ D+++ +W+   
    KIAA1242   314    LQSErRLqGHRQEVCGLKWSTD-HQLLASGGNDNKLLVWN    352  

PF00400.22.fs: domain 3 of 6, from 314 to 352: score 33.1, E = 2.3e-08
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       +  + l+gH   V+ +++s d  +llasg+ D+++ +W+   
    KIAA1242   314    LQSErRLqGHRQEVCGLKWSTD-HQLLASGGNDNKLLVWN    352  

PF00400.22.fs: domain 4 of 6, from 356 to 386: score 14.1, E = 0.0054
                   *->geck.vl.gHtstVtcvafspdsgpllasgS<-*
                        +++ ++ H ++V ++a+sp++  llasg+   
    KIAA1242   356    LSPVqQYtEHLAAVKAIAWSPHQHGLLASGG    386  

PF00400.22.ls: domain 5 of 5, from 444 to 482: score 30.0, E = 7.9e-06
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       +++  l+gH+  V  +a spd g+ +++g  D t++ W+   
    KIAA1242   444    LTQVaKLtGHSYRVLYLAMSPD-GEAIVTGAGDETLRFWN    482  

PF00400.22.fs: domain 6 of 6, from 444 to 482: score 28.0, E = 6.4e-07
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       +++  l+gH+  V  +a spd g+ +++g  D t++ W+   
    KIAA1242   444    LTQVaKLtGHSYRVLYLAMSPD-GEAIVTGAGDETLRFWN    482  

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