# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh10384.fasta.huge -Q ../query/KIAA1241.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1241, 863 aa vs ./tmplib.24314 library 1986642 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 9.1213+/-0.00789; mu= -6.7218+/- 0.531 mean_var=275.5913+/-66.990, 0's: 0 Z-trim: 6 B-trim: 0 in 0/40 Lambda= 0.077258 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1689 ( 2627 res) bg00184s4 (2627) 5145 588.1 4.1e-168 >>KIAA1689 ( 2627 res) bg00184s4 (2627 aa) initn: 5139 init1: 5139 opt: 5145 Z-score: 3110.0 bits: 588.1 E(): 4.1e-168 Smith-Waterman score: 5145; 96.797% identity (97.746% similar) in 843 aa overlap (19-861:547-1388) 10 20 30 40 KIAA12 KIIIKYISLGILFSLKYFLFFSNQQDATSVATESSESSTSDLPSFEVG : .::::::::::::::::::::::::::: KIAA16 KEQMLSCTQNIDGIVGFASTEKVEKRTDPILSLSNQQDATSVATESSESSTSDLPSFEVG 520 530 540 550 560 570 50 60 70 80 90 100 KIAA12 IRALCEVNNAEGSCIEERNVDLKNNSLEIDQTENVKPMLRGRFQRPKPNLSRAGKKSVLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA16 IRALCEVNNAEGSCIEERNVDLKNNSLEIDQTENVKPMLRGRFQRPKPNLSRAGKKSVLS 580 590 600 610 620 630 110 120 130 140 150 160 KIAA12 QGKTESESKNSHSKTSVEKNHVEKDKMNTLDILRMETTERENPEAETVSVLGEKNCLQEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA16 QGKTESESKNSHSKTSVEKNHVEKDKMNTLDILRMETTERENPEAETVSVLGEKNCLQEG 640 650 660 670 680 690 170 180 190 200 210 220 KIAA12 SQLKALRPVQVRGRLQKPKPNAGKAAERKEILISQEEIGANVEKNENESCADRDTPQHME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA16 SQLKALRPVQVRGRLQKPKPNAGKAAERKEILISQEEIGANVEKNENESCADRDTPQHME 700 710 720 730 740 750 230 240 250 260 270 280 KIAA12 DQSCKDFEEEDVILQPEKNDSFQNVQPDEPKVLNECLSVQENNKANKLNQVPILRTRFQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA16 DQSCKDFEEEDVILQPEKNDSFQNVQPDEPKVLNECLSVQENNKANKLNQVPILRTRFQK 760 770 780 790 800 810 290 300 310 320 330 340 KIAA12 PKPNIGRGTGRREISSKEEVLEKILVSGEMAAALRETVRLDTSPKEMVPAEINTKEMQSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA16 PKPNIGRGTGRREISSKEEVLEKILVSGEMAAALRETVRLDTSPKEMVPAEINTKEMQSD 820 830 840 850 860 870 350 360 370 380 390 400 KIAA12 LKETGRRAISPREKILDVIDDTIEMETGLKAMGREICLREKTPEVIDATEEIDKDLEEAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA16 LKETGRRAISPREKILDVIDDTIEMETGLKAMGREICLREKTPEVIDATEEIDKDLEEAG 880 890 900 910 920 930 410 420 430 440 450 460 KIAA12 RREISPQKNGPEEVKPLGEVETDLKATGNESSPREKTPEVTDATEEIDKNLEETGRRKIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA16 RREISPQKNGPEEVKPLGEVETDLKATGNESSPREKTPEVTDATEEIDKNLEETGRRKIS 940 950 960 970 980 990 470 480 490 500 510 520 KIAA12 PRENGPEEVKPVDEMETDLNATGRESSPREKTPEVIDATEEIDLEETEREVSPQENGLEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA16 PRENGPEEVKPVDEMETDLNATGRESSPREKTPEVIDATEEIDLEETEREVSPQENGLEE 1000 1010 1020 1030 1040 1050 530 540 550 560 570 580 KIAA12 VKPLGEMETDLKATGRDSFPRGKTPEVIDAIEEIEIDLEETEREISPQENGLEEVKPLGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA16 VKPLGEMETDLKATGRDSFPRGKTPEVIDAIEEIEIDLEETEREISPQENGLEEVKPLGE 1060 1070 1080 1090 1100 1110 590 600 610 620 630 640 KIAA12 MQTDLKATGREISPREKTPEVIDATEEIDKDLEETGRREISPEENGPEEVKPVDEMETDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA16 MQTDLKATGREISPREKTPEVIDATEEIDKDLEETGRREISPEENGPEEVKPVDEMETDL 1120 1130 1140 1150 1160 1170 650 660 670 680 690 700 KIAA12 KTTGREGSSREKTREVIDAAEVIETDLEETEREISPQENGPEEVKPVGKMETDLKEIREE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA16 KTTGREGSSREKTREVIDAAEVIETDLEETEREISPQENGPEEVKPVGKMETDLKEIREE 1180 1190 1200 1210 1220 1230 710 720 730 740 750 760 KIAA12 ISQREKVLAEFSAIREKEIDLKETGKRDIPMMEKVSGKMAVVEEMEADLKETGKENFRER ::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::: KIAA16 ISQREKVLAEISAIREKEIDLKETGKRDIPMMEKVSGKMAVVEEMEADLKETGKENFRER 1240 1250 1260 1270 1280 1290 770 780 790 800 810 820 KIAA12 GSEEICVTEEKVAELKQTGKTDISPRENELEETSTSRQTDTHLMQSGSNDFSAMPSLDIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA16 GSEEICVTEEKVAELKQTGKTDISPRENELEETSTSRQTDTHLMQSGSNDFSAMPSLDIQ 1300 1310 1320 1330 1340 1350 830 840 850 860 KIAA12 VCIFLSFKSFLNAFSEEINNSMIILSLSPTTFKNL : :.... :: :: .: . :: KIAA16 -NISSEVLSMMHTPVEEKRNSEKEVSSHFSHFKISSQTHESDKTEVQGIQSPDVPEQFSD 1360 1370 1380 1390 1400 1410 KIAA16 INLSKSLPQEQKPLEIKPAPFVRSRFKRPKPNLARAALKRETTESEKYIYEKKSETEKME 1420 1430 1440 1450 1460 1470 863 residues in 1 query sequences 1986642 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:14:26 2008 done: Thu Dec 18 15:14:26 2008 Total Scan time: 0.630 Total Display time: 0.070 Function used was FASTA [version 34.26.5 April 26, 2007]