hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21170052/chunk_1/iprscan-20080501-21170052.nocrc
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Query sequence: KIAA1240
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00297                                                  68.9    6.4e-16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00297    1/1     236   343 ..     1   118 []    68.9  6.4e-16

Alignments of top-scoring domains:
SM00297: domain 1 of 1, from 236 to 343: score 68.9, E = 6.4e-16
                   *->spk.qkklqellkallekldshgvpssrGrplawpFlepvdkkeLgv
                      ++ ++++l  +l+ + + l  +        + + +F +pv++ +   
    KIAA1240   236    EENtLRELRLFLRDVTKRLATD--------KRFNIFSKPVSDYL--- 271  

                   PDYydiIkkPMDLktIkkklengkYssleeFvaDfnLmfsNAktYNe...
                       ++Ik+PMDL+t+  k++++ Y ++++F++D+ L++sNA  YN++++
    KIAA1240   272 ----EVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNPdkd 317  

                   .pdsevykdAkkLeklfeeklkelpp<-*
                   + d ++   A +L+++  + ++ + +   
    KIAA1240   318 pGDKIIRHRACTLKDTAHAIIAAELD    343  

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