hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21170052/chunk_1/iprscan-20080501-21170052.nocrc
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Query sequence: KIAA1240
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00439.15.fs Bromodomain                                  60.6    1.8e-16   1
PF00439.15.ls Bromodomain                                  55.3    1.9e-13   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00439.15.ls   1/1     240   325 ..     1    92 []    55.3  1.9e-13
PF00439.15.fs   1/1     267   315 ..    33    82 ..    60.6  1.8e-16

Alignments of top-scoring domains:
PF00439.15.ls: domain 1 of 1, from 240 to 325: score 55.3, E = 1.9e-13
                   *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk
                      l++l l++++ +++   ++++ +f + +s     DY e+Ik+PMDL+
    KIAA1240   240    LRELRLFLRDVTKRLATDKRFNIFSKPVS-----DYLEVIKEPMDLS 281  

                   TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-*
                   T+  k++++ Y  ++++F++D+ L++sNA+ YN++  +  k  +    
    KIAA1240   282 TVITKIDKHNY-LTAKDFLKDIDLICSNALEYNPDKDPGDKIIRH    325  

PF00439.15.fs: domain 1 of 1, from 267 to 315: score 60.6, E = 1.8e-16
                   *->lPDYYeiIkkPMDLkTIkkklkngkYissleeFvaDfnLmfsNAktY
                      + DY e+Ik+PMDL+T+  k++++ Y  ++++F++D+ L++sNA+ Y
    KIAA1240   267    VSDYLEVIKEPMDLSTVITKIDKHNY-LTAKDFLKDIDLICSNALEY 312  

                   Nep<-*
                   N++   
    KIAA1240   313 NPD    315  

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