hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21120864/chunk_1/iprscan-20080501-21120864.nocrc
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Query sequence: KIAA1237
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00181                                                  71.2    1.3e-16   3
SM00179                                                  59.5    4.3e-13   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00179    1/2     872   910 ..     1    34 []    12.8    0.043
SM00181    1/3     875   910 ..     1    32 []    35.4  7.8e-06
SM00179    2/2     912   950 ..     1    34 []    46.7  3.1e-09
SM00181    2/3     915   950 ..     1    32 []    30.5  0.00023
SM00181    3/3    1070  1118 ..     1    32 []     5.3       86

Alignments of top-scoring domains:
SM00179: domain 1 of 2, from 872 to 910: score 12.8, E = 0.043
                   *->DiDEC...pCqnGGptgtCi..N.vGSYrC.CppGyt.rnCe<-*
                       ++ C  +pC ++G    C+ +N+  +Y+C+Cpp +++  C    
    KIAA1237   872    SVNSCavnPCLHNG---ECVadNtSRGYHCrCPPSWQgDDCS    910  

SM00181: domain 1 of 3, from 875 to 910: score 35.4, E = 7.8e-06
                   *->eCa..pCsnGgtEqnGtCi......sytC.CpgpGytg.rCe<-*
                       Ca +pC ++     G+C+ ++++++y+C+Cp p ++g+ C    
    KIAA1237   875    SCAvnPCLHN-----GECVadntsrGYHCrCP-PSWQGdDCS    910  

SM00179: domain 2 of 2, from 912 to 950: score 46.7, E = 3.1e-09
                   *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt...rnCe<-*
                      D++EC ++pC+  +   tC N+ GS+ C+Cp Gy+  ++ C    
    KIAA1237   912    DVNEClsnPCPSTA---TCNNtQGSFICkCPVGYQlekGICN    950  

SM00181: domain 2 of 3, from 915 to 950: score 30.5, E = 0.00023
                   *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg...rCe<-*
                      eC+++pC        +tC ++ +s+ C+Cp  Gy+++++ C    
    KIAA1237   915    ECLsnPCPST-----ATCNntqgSFICkCP-VGYQLekgICN    950  

SM00181: domain 3 of 3, from 1070 to 1118: score 5.3, E = 86
                   *->eCa.............pCsnGgtEqnGtCi.........sytC..Cp
                      eC+++++  ++ ++   C+         C ++    ++  ++C+ C 
    KIAA1237  1070    ECDkdtsictdldgvaLCQ---------CKsgyfqfnkmDHSCraCE 1107 

                   gpGytg...rCe<-*
                    +Gy++++++C    
    KIAA1237  1108 -DGYRLeneTCM    1118 

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