hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21102606/chunk_1/iprscan-20080501-21102606.nocrc
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Query sequence: KIAA1236
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00129                                                 140.1    2.3e-37   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00129     1/1     327   691 ..     1   404 []   140.1  2.3e-37

Alignments of top-scoring domains:
SM00129: domain 1 of 1, from 327 to 691: score 140.1, E = 2.3e-37
                   *->kgnIrVavRvdrdRPlnkrEksekakeespsvvtv.....tvtvn..
                       g+++V  R+    P  + ++s +    + s ++v++++++v++ ++
    KIAA1236   327    IGKVKVMLRI---WPAQGAQRSAE----AMSFLKVdprkkQVILYdp 366  

                   .....................FtFDkVFWrydvddpsasQedVFeevaaP
                     +++++ ++++  +   ++ F FD VF      ++++ Q +V   ++a 
    KIAA1236   367 aagppgsagprraataavpkmFAFDAVF------PQDSEQAEVCSGTVAD 410  

                   LvdsaldGYNvaTIFAYGQTGSGKTyTMsGtptdpgilsndladitpdep
                   +++s+++G  + +IF  G    GK+yTM G +++p            +++
    KIAA1236   411 VLQSVVSGADG-CIFSFGHMSLGKSYTMIGKDSSP------------QSL 447  

                   GiIPRaledlFekide........fsVkvSylEIYNEk...irDLLspsp
                   Gi P a+  lF+ i+e++++++++fsV+vS +E+ + +++++rDLL +  
    KIAA1236   448 GIVPCAISWLFRLIEErrertgtrFSVRVSAVEV-CGRdqsLRDLLAEVA 496  

                   enSksrGkhakqsskkkLrirEdkngnrhdapkLtrlrgqggvyVvGLte
                   ++S ++       +++++ +rEd+                 g + ++ +e
    KIAA1236   497 PGSLQD------TQSPGVYLREDPV---------------CGAQLQNQSE 525  

                   vsVsSaeevlellerGnknRtv..aaTkmNeeSSRSHaiFtitleqkekl
                       +ae +   l+ + + R++++a +   ++ S SH  Ft+++ q +  
    KIAA1236   526 LRAPTAEKAAFYLDAALAARSTsrAGCGEDARRS-SHMLFTLHVYQYRM- 573  

                   epiadektesstnegteqiksskLnLVDLAGSERaskTgseaeGdRLkEa
                           e++   g +   +s+L+L+DL   E a+  g   +G+ +  +
    KIAA1236   574 --------EKCGRGGMS-GGRSRLHLIDLGSCEAAA--G--RAGEAA--G 608  

                   qnINkSLlaLGnVInALaddshdsaeseatkqaggkssHIPYRDSKLTrL
                   +   +SL+aLG VI AL++                + +H+PYRD  LT+L
    KIAA1236   609 GPLCLSLSALGSVILALVN----------------GAKHVPYRDHRLTML 642  

                   LQdSL.GGNsKTlMIanvSPsssnyeETlsTLrFAsRaksIknkpavne<
                   L++SL +  ++T+MIa+vS ++ + +ETlsT + A+R+   + k+a+   
    KIAA1236   643 LRESLaTAGCRTTMIAHVSDAPAQHAETLSTVQLAARIHRLRRKKAKYA  691  

                   -*
                     
    KIAA1236     -    -    

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