hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21102606/chunk_1/iprscan-20080501-21102606.nocrc
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Query sequence: KIAA1236
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00225.13.fs Kinesin motor domain                           147.1    4.2e-41   3
PF00225.13.ls Kinesin motor domain                           138.8    1.4e-38   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00225.13.ls   1/1     335   684 ..     1   424 []   138.8  1.4e-38
PF00225.13.fs   1/3     388   481 ..    37   191 ..    67.8  3.6e-18
PF00225.13.fs   3/3     613   684 ..   346   424 .]    77.1  1.1e-20

Alignments of top-scoring domains:
PF00225.13.ls: domain 1 of 1, from 335 to 684: score 138.8, E = 1.4e-38
                   *->RvRPlnerEksrgssdvvnv................sedvessvitn
                      R+ P  +  +s+ + + ++v++++++    ++  +++ ++  ++  +
    KIAA1236   335    RIWPAQGAQRSAEAMSFLKVdprkkqvilydpaagpPGSAGPRRAAT 381  

                   .gkektFtFDkVFdpeatQelsepYAsqefvyestakplvesvleGyNvt
                      +k F FD+VF+ ++          q +v   t++++++sv+ G  ++
    KIAA1236   382 aAVPKMFAFDAVFPQDSE---------QAEVCSGTVADVLQSVVSGADGC 422  

                   IFAYGQTGSGKTYTMeGstdsdksspnpsdsCttpeeepGiiPRaledlF
                   IF  G    GK+YTM G+++               +++ Gi P a++ lF
    KIAA1236   423 IFSFGHMSLGKSYTMIGKDS--------------SPQSLGIVPCAISWLF 458  

                   erieerkerkpvfKPklnekgwellncqetligvsfdtrglsSdlyvedl
                   + ieer+er++                                       
    KIAA1236   459 RLIEERRERTG--------------------------------------T 470  

                   efsvkvSylEIYNEk...irDLLspsppqrgsp.skdnekkkkkpLrire
                   +fsv+vS +E+ +++++++rDLL+        p+s +++++      +re
    KIAA1236   471 RFSVRVSAVEV-CGRdqsLRDLLAEVA-----PgSLQDTQSPG--VYLRE 512  

                   DpkrGgkmdgvyVkGLteveVtsaeevlelLelGnknRtvasTkmNeeSS
                   Dp  G        ++ +e    +ae +   L+ + + R+++   + e   
    KIAA1236   513 DPVCG-----AQLQNQSELRAPTAEKAAFYLDAALAARSTSRAGCGEDAR 557  

                   R.SHaiFtitveqrn..tdttgsvvtgkdnsgeesvrvskLnLVDLAGSE
                   R+SH  Ft++v+q++ ++++ g+ + g          +s+L+L+DL   E
    KIAA1236   558 RsSHMLFTLHVYQYRmeKCGRGGMSGG----------RSRLHLIDLGSCE 597  

                   RaskTgatgAggrRLkEaanINkSLsaLGnVInALadnqkssHiPYRDSK
                     + +g +g +      ++   +SLsaLG VI AL+++  ++H+PYRD  
    KIAA1236   598 --AAAGRAG-EAA----GGPLCLSLSALGSVILALVNG--AKHVPYRDHR 638  

                   LTrLLQDSLGGGDNsKTlMIaniSPsssrNntnyeETLsTLrFAsRAKnI
                   LT+LL++SL     ++T MIa++S ++     +  ETLsT + A+R  + 
    KIAA1236   639 LTMLLRESLATA-GCRTTMIAHVSDAPA----QHAETLSTVQLAARIHRL 683  

                   k<-*
                   +   
    KIAA1236   684 R    684  

PF00225.13.fs: domain 1 of 3, from 388 to 481: score 67.8, E = 3.6e-18
                   *->FtFDkVFdpeatQelsepYAsqefvyestakplvesvleGyNvtIFA
                      F FD+VF+ ++          q +v   t++++++sv+ G  ++IF 
    KIAA1236   388    FAFDAVFPQDSE---------QAEVCSGTVADVLQSVVSGADGCIFS 425  

                   YGQTGSGKTYTMeGstdsdksspnpsdsCttpeeepGiiPRaledlFeri
                    G    GK+YTM G+++               +++ Gi P a++ lF+ i
    KIAA1236   426 FGHMSLGKSYTMIGKDS--------------SPQSLGIVPCAISWLFRLI 461  

                   eerkerkpvfKPklnekgwellncqetligvsfdtrglsSdlyvedlefs
                   eer+er++                                       +fs
    KIAA1236   462 EERRERTG--------------------------------------TRFS 473  

                   vkvSylEI<-*
                   v+vS +E+   
    KIAA1236   474 VRVSAVEV    481  

PF00225.13.fs: domain 3 of 3, from 613 to 684: score 77.1, E = 1.1e-20
                   *->kSLsaLGnVInALadnqkssHiPYRDSKLTrLLQDSLGGGDNsKTlM
                      +SLsaLG VI AL+++  ++H+PYRD  LT+LL++SL     ++T M
    KIAA1236   613    LSLSALGSVILALVNG--AKHVPYRDHRLTMLLRESLATA-GCRTTM 656  

                   IaniSPsssrNntnyeETLsTLrFAsRAKnIk<-*
                   Ia++S ++     +  ETLsT + A+R  + +   
    KIAA1236   657 IAHVSDAPA----QHAETLSTVQLAARIHRLR    684  

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