hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21070165/chunk_1/iprscan-20080501-21070165.nocrc
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Query sequence: KIAA1234
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00091                                                  55.1    8.9e-12   1
SM00353                                                  46.4    3.7e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00353    1/1      43    97 ..     1    61 []    46.4  3.7e-09
SM00091    1/1     122   188 ..     1    68 []    55.1  8.9e-12

Alignments of top-scoring domains:
SM00353: domain 1 of 1, from 43 to 97: score 46.4, E = 3.7e-09
                   *->narERrlrRRekiNeqafdeLrslvPtlpkgggnskKlsKasiLrlA
                      n + R  +R +++N   +d L+sl+P+ p   +  +Kl+K+s+Lrl 
    KIAA1234    43    NPSKR--HR-DRLNA-ELDHLASLLPFPP---DIISKLDKLSVLRLS 82   

                   ieYIr.ksLqeqlqe<-*
                   ++Y+r ks  +++qe   
    KIAA1234    83 VSYLRvKSFFQVVQE    97   

SM00091: domain 1 of 1, from 122 to 188: score 55.1, E = 8.9e-12
                   *->erlraileslpdgiivldldGrilyaNpaaeellGyspeeliGksll
                       + r +lesl+ + +v++++G+i ya++++ ++lG+ + ++++++++
    KIAA1234   122    LEGRLLLESLNGFALVVSAEGTIFYASATIVDYLGFHQTDVMHQNIY 168  

                   elihpedrlleevqe.lqrlla<-*
                   ++ih +dr  + + ++l  +++   
    KIAA1234   169 DYIHVDDR--QDFCRqLHWAMD    188  

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