hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21070165/chunk_1/iprscan-20080501-21070165.nocrc
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Query sequence: KIAA1234
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00989.14.fs PAS fold                                        40.5    9.5e-12   1
PF00010.16.fs Helix-loop-helix DNA-binding domain             22.2    3.7e-05   1
PF00989.14.ls PAS fold                                        27.1    5.6e-05   1
PF00010.16.ls Helix-loop-helix DNA-binding domain             17.7     0.0017   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00010.16.fs   1/1      46    90 ..    10    53 .]    22.2  3.7e-05
PF00010.16.ls   1/1      46    90 ..     1    53 []    17.7   0.0017
PF00989.14.fs   1/1     122   187 ..     1    70 [.    40.5  9.5e-12
PF00989.14.ls   1/1     122   240 ..     1   123 []    27.1  5.6e-05

Alignments of top-scoring domains:
PF00010.16.fs: domain 1 of 1, from 46 to 90: score 22.2, E = 3.7e-05
                   *->RrRRdriNdafeeLrellPtla..pskKlsKaeiLrlAveYIksLq<
                      +r Rdr+N  ++ L +llP  +++   Kl+K+++Lrl v+Y++    
    KIAA1234    46    KRHRDRLNAELDHLASLLPF-PpdIISKLDKLSVLRLSVSYLRVKS  90   

                   -*
                     
    KIAA1234     -    -    

PF00010.16.ls: domain 1 of 1, from 46 to 90: score 17.7, E = 0.0017
                   *->rRrahnarERrRRdriNdafeeLrellPtla..pskKlsKaeiLrlA
                      +R          Rdr+N  ++ L +llP  +++   Kl+K+++Lrl 
    KIAA1234    46    KRH---------RDRLNAELDHLASLLPF-PpdIISKLDKLSVLRLS 82   

                   veYIksLq<-*
                   v+Y++      
    KIAA1234    83 VSYLRVKS    90   

PF00989.14.fs: domain 1 of 1, from 122 to 187: score 40.5, E = 9.5e-12
                   *->edlrailesnlpdgifvvDvedGrilyvNaaaeellGlsreeviGks
                       + r +les l  + +vv  + G i+y++a++ + lG+ + +v++++
    KIAA1234   122    LEGRLLLES-LNGFALVVS-AEGTIFYASATIVDYLGFHQTDVMHQN 166  

                   lldlipeeddaeclvaelllqal<-*
                   ++d+i+ +d+++  + ++l++a+   
    KIAA1234   167 IYDYIHVDDRQD--FCRQLHWAM    187  

PF00989.14.ls: domain 1 of 1, from 122 to 240: score 27.1, E = 5.6e-05
                   *->edlrailesnlpdgifvvDvedGrilyvNaaaeellGlsreeviGks
                       + r +les l  + +vv  + G i+y++a++ + lG+ + +v++++
    KIAA1234   122    LEGRLLLES-LNGFALVVS-AEGTIFYASATIVDYLGFHQTDVMHQN 166  

                   lldlipeeddaeclvaelllqale.......qgee.rgvevsfrvsgqrf
                   ++d+i+ +d+++  + ++l++a+ +++   +q  + ++++  +  + +r 
    KIAA1234   167 IYDYIHVDDRQD--FCRQLHWAMDppqvvfgQAPPlETGDDAILGRLLRA 214  

                   lvrdgrpihvevraspvrdaggeilgflgvlrDi<-*
                      +        + s ++ +     +f++++r+    
    KIAA1234   215 ---QEWGTGTPTEYSAFLTR-----CFICRVRCL    240  

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