hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-21051808/chunk_1/iprscan-20080501-21051808.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1233 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00090.9.fs Thrombospondin type 1 domain 105.6 3.9e-31 7 PF00047.15.ls Immunoglobulin domain 92.0 1.7e-24 3 PF00047.15.fs Immunoglobulin domain 86.5 5.8e-23 3 PF00090.9.ls Thrombospondin type 1 domain 86.0 1e-22 6 PF07679.6.fs Immunoglobulin I-set domain 78.3 3.1e-22 3 PF07679.6.ls Immunoglobulin I-set domain 58.9 1.6e-14 2 PF08686.1.fs PLAC (protease and lacunin) domain 53.3 5.5e-14 1 PF08686.1.ls PLAC (protease and lacunin) domain 55.3 1.9e-13 1 PF07686.7.fs Immunoglobulin V-set domain 27.6 2.6e-07 2 PF07686.7.ls Immunoglobulin V-set domain 24.3 0.00017 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00090.9.ls 1/6 39 91 .. 1 55 [] 29.5 1.1e-05 PF00090.9.fs 2/7 42 91 .. 4 55 .] 28.2 7.8e-08 PF00090.9.ls 2/6 95 140 .. 1 55 [] 18.4 0.00036 PF00090.9.fs 3/7 98 133 .. 4 42 .. 19.4 3.4e-05 PF00090.9.fs 4/7 158 185 .. 4 34 .. 19.6 3e-05 PF00090.9.ls 3/6 158 212 .. 1 55 [] 12.2 0.002 PF07679.6.ls 1/2 244 327 .. 1 96 [] 7.4 0.00027 PF00047.15.ls 1/3 259 316 .. 1 65 [] 20.1 0.0072 PF00047.15.fs 1/3 259 316 .. 1 65 [] 18.3 0.00029 PF00047.15.fs 2/3 540 597 .. 1 65 [] 26.3 1.8e-06 PF00047.15.ls 2/3 540 597 .. 1 65 [] 28.1 2.8e-05 PF07679.6.ls 2/2 631 716 .. 1 96 [] 51.4 2.7e-12 PF07686.7.fs 2/2 634 699 .. 1 122 [. 23.2 4.4e-06 PF07686.7.ls 1/1 634 717 .. 1 141 [] 24.3 0.00017 PF07679.6.fs 3/3 641 716 .. 10 96 .] 56.1 9.1e-16 PF00047.15.ls 3/3 646 701 .. 1 65 [] 43.7 5.9e-10 PF00047.15.fs 3/3 646 701 .. 1 65 [] 41.9 9.8e-11 PF00090.9.ls 4/6 760 815 .. 1 55 [] 5.9 0.011 PF00090.9.ls 5/6 821 876 .. 1 55 [] 17.0 0.00054 PF00090.9.fs 6/7 821 843 .. 3 25 .. 18.7 5.8e-05 PF00090.9.ls 6/6 933 987 .. 1 55 [] 3.2 0.024 PF08686.1.ls 1/1 990 1022 .. 1 35 [] 55.3 1.9e-13 PF08686.1.fs 1/1 990 1022 .. 1 35 [] 53.3 5.5e-14 Alignments of top-scoring domains: PF00090.9.ls: domain 1 of 6, from 39 to 91: score 29.5, E = 1.1e-05 *->spWseWSpCSVTCGkGirtRqRvcnsp....aPqkkggepCtgdvqe + + W pCS TCG Gi+tR +c +p++++aP +e C +++ KIAA1233 39 WHVGSWGPCSATCGVGIQTRDVYCLHPgetpAP----PEECRDEKPH 81 leteaCdmmdkC<-* +aC ++ C KIAA1233 82 -ALQAC-NQFDC 91 PF00090.9.fs: domain 2 of 7, from 42 to 91: score 28.2, E = 7.8e-08 *->seWSpCSVTCGkGirtRqRvcnsp....aPqkkggepCtgdvqelet + W pCS TCG Gi+tR +c +p++++aP +e C +++ KIAA1233 42 GSWGPCSATCGVGIQTRDVYCLHPgetpAP----PEECRDEKPH-AL 83 eaCdmmdkC<-* +aC ++ C KIAA1233 84 QAC-NQFDC 91 PF00090.9.ls: domain 2 of 6, from 95 to 140: score 18.4, E = 0.00036 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete + +eW +CS TCG+G++ R+ +c + +g+++ + + e KIAA1233 95 WHIEEWQQCSRTCGGGTQNRRVTCRQLL---TDGSFLNLSD-----E 133 aCdmmdkC<-* C +k KIAA1233 134 LC-QGPKA 140 PF00090.9.fs: domain 3 of 7, from 98 to 133: score 19.4, E = 3.4e-05 *->seWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvq<-* +eW +CS TCG+G++ R+ +c + +g+++ + ++ KIAA1233 98 EEWQQCSRTCGGGTQNRRVTCRQLL---TDGSFLNLSDE 133 PF00090.9.fs: domain 4 of 7, from 158 to 185: score 19.6, E = 3e-05 *->seWSpCSVTCGkGirtRqRvcnspaPqkkgg<-* + WS CSV+CG Gi+ R+ vc+ a ++g KIAA1233 158 GDWSKCSVSCGVGIQRRKQVCQRLA---AKG 185 PF00090.9.ls: domain 3 of 6, from 158 to 212: score 12.2, E = 0.002 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqe.... + WS CSV+CG Gi+ R+ vc+ a ++g ++ ++ KIAA1233 158 ---GDWSKCSVSCGVGIQRRKQVCQRLA---AKGRRIPLSEMMcrdl 198 ...leteaCdmmdkC<-* ++ ++ C m++C KIAA1233 199 pglPLVRSC-QMPEC 212 PF07679.6.ls: domain 1 of 2, from 244 to 327: score 7.4, E = 0.00027 *->PkFtqkp.kdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvll ++ +++++ s+ C V+ + + ++W KdG+ l++ KIAA1233 244 KRINLTIgSRAYLLPNTSVIIKCPVRRFQKSLIQWEKDGRCLQN--- 287 psdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV s+r+ +t +g +L+I + D G+Y+C+A G+a+ ++ L+ KIAA1233 288 -SKRLGITKSG-----SLKIHGLAAPDIGVYRCIA----GSAQETVVLKL 327 <-* KIAA1233 - - PF00047.15.ls: domain 1 of 3, from 259 to 316: score 20.1, E = 0.0072 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq + sv + C v + ++W ++g l+++ + +++ +++ KIAA1233 259 NTSVIIKCPV--RRFQKSLIQWEKDGRcLQnSKRLGITKSGS----- 298 tsLtitnvtpeDggtYtCvv<-* L i+ + D g+Y+C + KIAA1233 299 --LKIHGLAAPDIGVYRCIA 316 PF00047.15.fs: domain 1 of 3, from 259 to 316: score 18.3, E = 0.00029 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq + sv + C v + ++W ++g l+++ + +++ +++ KIAA1233 259 NTSVIIKCPV--RRFQKSLIQWEKDGRcLQnSKRLGITKSGS----- 298 tsLtitnvtpeDggtYtCvv<-* L i+ + D g+Y+C + KIAA1233 299 --LKIHGLAAPDIGVYRCIA 316 PF00047.15.fs: domain 2 of 3, from 540 to 597: score 26.3, E = 1.8e-06 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq e ++ C p+++t+tW+++g+ l+++v++ + ++ KIAA1233 540 TEVINILCDL--ITPSEATYTWTKDGTlLQpSVKIILDGTGK----- 579 tsLtitnvtpeDggtYtCvv<-* +i+n t+ g+Y C v KIAA1233 580 --IQIQNPTRKEQGIYECSV 597 PF00047.15.ls: domain 2 of 3, from 540 to 597: score 28.1, E = 2.8e-05 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq e ++ C p+++t+tW+++g+ l+++v++ + ++ KIAA1233 540 TEVINILCDL--ITPSEATYTWTKDGTlLQpSVKIILDGTGK----- 579 tsLtitnvtpeDggtYtCvv<-* +i+n t+ g+Y C v KIAA1233 580 --IQIQNPTRKEQGIYECSV 597 PF07679.6.ls: domain 2 of 2, from 631 to 716: score 51.4, E = 2.7e-12 *->PkFtqkp.kdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvll + + + + ve++ G ++ C V+G P+P ++W+K G ls KIAA1233 631 NHLSVVVgGIVEAALGANVTIRCPVKGVPQPNITWLKRGGSLSG--- 674 psdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV ++ ++g +L +nv + +G+Y+C+AtN G+a a+ L+ KIAA1233 675 ---NVSLLFNG-----SLLLQNVSLENEGTYVCIATNALGKAVATSVLHL 716 <-* KIAA1233 - - PF07686.7.fs: domain 2 of 2, from 634 to 699: score 23.2, E = 4.4e-06 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss +++v + v +a+G++vt++C ++ + KIAA1233 634 SVVVGG----------------IVEAALGANVTIRCPVK----GV-- 658 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls + +i+W + + +++g+v+l KIAA1233 659 --PQPNITWLK-RGG--------------------------SLSGNVSLL 679 gnpskgdfsLtIsnlqlsDsGtYyC<-* n+s L ++n++l+ +GtY C KIAA1233 680 FNGS-----LLLQNVSLENEGTYVC 699 PF07686.7.ls: domain 1 of 1, from 634 to 717: score 24.3, E = 0.00017 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss +++v + v +a+G++vt++C ++ + KIAA1233 634 SVVVGG----------------IVEAALGANVTIRCPVK----GV-- 658 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls + +i+W + + +++g+v+l KIAA1233 659 --PQPNITWLK-RGG--------------------------SLSGNVSLL 679 gnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* n+s L ++n++l+ +GtY C n + + +L+ l KIAA1233 680 FNGS-----LLLQNVSLENEGTYVCIATNA-LGKAVATSVLHLL 717 PF07679.6.fs: domain 3 of 3, from 641 to 716: score 56.1, E = 9.1e-16 *->veVqeGesarfeCkVtGtPePtVsWfKdGqplssvllpsdrfkvtyd ve++ G ++ C V+G P+P ++W+K G ls ++ ++ KIAA1233 641 VEAALGANVTIRCPVKGVPQPNITWLKRGGSLSG------NVSLLFN 681 gGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV<-* g +L +nv + +G+Y+C+AtN G+a a+ L+ KIAA1233 682 G-----SLLLQNVSLENEGTYVCIATNALGKAVATSVLHL 716 PF00047.15.ls: domain 3 of 3, from 646 to 701: score 43.7, E = 5.9e-10 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G vt++C v+ g p++++tWl+ g++l + v+ + + KIAA1233 646 GANVTIRCPVK--GVPQPNITWLKRGGsLSgNVSLLFNGS------- 683 tsLtitnvtpeDggtYtCvv<-* L ++nv+ e +gtY C + KIAA1233 684 --LLLQNVSLENEGTYVCIA 701 PF00047.15.fs: domain 3 of 3, from 646 to 701: score 41.9, E = 9.8e-11 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G vt++C v+ g p++++tWl+ g++l + v+ + + KIAA1233 646 GANVTIRCPVK--GVPQPNITWLKRGGsLSgNVSLLFNGS------- 683 tsLtitnvtpeDggtYtCvv<-* L ++nv+ e +gtY C + KIAA1233 684 --LLLQNVSLENEGTYVCIA 701 PF00090.9.ls: domain 4 of 6, from 760 to 815: score 5.9, E = 0.011 *->spWseWSpCSVTCG.kGirtRqRvcnspaPqkkggepCtgdvqe... + + WS CS TCG+ G r+ + c++ +++ + ++ ++ KIAA1233 760 WEPGNWSHCSATCGhLGARIQRPQCVMA------NGQEVSEALCdhl 800 ....leteaCdmmdkC<-* +++ +e+C + + C KIAA1233 801 qkplAGFEPC-NIRDC 815 PF00090.9.ls: domain 5 of 6, from 821 to 876: score 17.0, E = 0.00054 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkgge.......pCtgd +s WS+CSV+CG+G +Rq +c+ ++ ++g + +++ C + KIAA1233 821 --TSVWSQCSVSCGEGYHSRQVTCKRTK---ANGTvqvvsprACAPK 862 vqeleteaCdmmdkC<-* +++l ++C ++C KIAA1233 863 DRPLGRKPC-FGHPC 876 PF00090.9.fs: domain 6 of 7, from 821 to 843: score 18.7, E = 5.8e-05 *->WseWSpCSVTCGkGirtRqRvcn<-* +s WS+CSV+CG+G +Rq +c+ KIAA1233 821 TSVWSQCSVSCGEGYHSRQVTCK 843 PF00090.9.ls: domain 6 of 6, from 933 to 987: score 3.2, E = 0.024 *->spWseWSpCSVTCGkGirtRqRvcnspaPqk.kggepCtgdvqelet ++++W pC+ CG G ++R+ c ++ k+ + +C+ ++ ++ KIAA1233 933 WHTGPWKPCTAACGRGFQSRKVDCIHTRSCKpVAKRHCVQKKKPISW 979 eaCdmmdkC<-* + C + C KIAA1233 980 RHC-LGPSC 987 PF08686.1.ls: domain 1 of 1, from 990 to 1022: score 55.3, E = 1.9e-13 *->eCrDsprlAnCelVvqakLCshkyYsqfCCrSCtr<-* C+D+++ +C++V++++LCs+ +Y+q+CC+SC++ KIAA1233 990 DCTDTTH--YCMFVKHLNLCSLDRYKQRCCQSCQE 1022 PF08686.1.fs: domain 1 of 1, from 990 to 1022: score 53.3, E = 5.5e-14 *->eCrDsprlAnCelVvqakLCshkyYsqfCCrSCtr<-* C+D+++ +C++V++++LCs+ +Y+q+CC+SC++ KIAA1233 990 DCTDTTH--YCMFVKHLNLCSLDRYKQRCCQSCQE 1022 //