hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21034146/chunk_1/iprscan-20080501-21034146.nocrc
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Query sequence: KIAA1232
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00072                                                 271.4    6.8e-77   1
SM00228                                                  99.2    4.6e-25   1
SM00326                                                  53.0    3.8e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00228    1/1      65   138 ..     1    80 []    99.2  4.6e-25
SM00326    1/1     175   241 ..     1    58 []    53.0  3.8e-11
SM00072    1/1     329   508 ..     1   203 []   271.4  6.8e-77

Alignments of top-scoring domains:
SM00228: domain 1 of 1, from 65 to 138: score 99.2, E = 4.6e-25
                   *->gglGfsivg.....gifvssvvpGspAakaGrkslglLkvGDvIleV
                       glGf+ivg+++++gifvs +++G+pA+ +G      L+ GD+Il+V
    KIAA1232    65    TGLGFNIVGgedgeGIFVSFILAGGPADLSGE-----LRRGDRILSV 106  

                   NGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   NG ++++++the+a+++lk+ag+     +vt++ ++++   
    KIAA1232   107 NG-VNLRNATHEQAAAALKRAGQ-----SVTIVAQYRP    138  

SM00326: domain 1 of 1, from 175 to 241: score 53.0, E = 3.8e-11
                   *->eyvvAlYDyea.....qnedELsFkkGDiitvleksddgWweGelnr
                       yv+Al+Dy+ ++++   ++ LsF+ GDi++v++ sdd+Ww+++l +
    KIAA1232   175    LYVRALFDYDRtrdscLPSQGLSFSYGDILHVINASDDEWWQARLVT 221  

                   ....tGkeGlfPsnYVeeie<-*
                   +++++ ++G +Ps    e++   
    KIAA1232   222 phgeSEQIGVIPSKKRVEKK    241  

SM00072: domain 1 of 1, from 329 to 508: score 271.4, E = 6.8e-77
                   *->drRpivLsGpsGvGKstlkakLlqeyPdypkfgfsVshTTRppRpgE
                      + Rp++++Gp    K++++++L++e+P+  kfg +V+hTTRp+R  E
    KIAA1232   329    YARPVIILGP---MKDRVNDDLISEFPH--KFGSCVPHTTRPRRDNE 370  

                   vnGPvvDYhFvsLkeefeqdiksgkflEwgeysgnlyYGTskesvrqvae
                   v+G  +DYhFv ++e++e+di+++kf+E g++++n +YGTs++svr+vae
    KIAA1232   371 VDG--QDYHFVVSREQMEKDIQDNKFIEAGQFNDN-LYGTSIQSVRAVAE 417  

                   kGKhclLDidpqgvkqlkkarRkselnpiviFIapPsleeleerlrgaeq
                   +GKhc+LD++ +++k+l++a    +l+pi iFI+p+s+e l+e++r    
    KIAA1232   418 RGKHCILDVSGNAIKRLQQA----QLYPIAIFIKPKSIEALMEMNRR--- 460  

                   RgteteeriqkrlaaaaqkeaqeyskeahlFdlvivnddledayYkeLke
                    + e++++i ++++   ++e++ey      F++++++d+le++y  ++k+
    KIAA1232   461 QTYEQANKIYDKAMK-LEQEFGEY------FTAIVQGDSLEEIY-NKIKQ 502  

                   ileaeq<-*
                   i+e++    
    KIAA1232   503 IIEDQS    508  

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