# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh08445.fasta.huge -Q ../query/KIAA1232.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1232, 520 aa vs ./tmplib.24314 library 1986985 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 5.6067+/-0.00573; mu= 9.8691+/- 0.388 mean_var=129.3784+/-31.518, 0's: 0 Z-trim: 20 B-trim: 0 in 0/40 Lambda= 0.112757 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0583 ( 1952 res) af01829 (1952) 247 52.5 3.4e-07 KIAA1719 ( 1050 res) pf00330s1 (1050) 201 44.6 4.1e-05 KIAA0147 ( 1630 res) ha01022s1 (1630) 196 44.1 9.4e-05 KIAA1526 ( 963 res) fj04743(revised) ( 963) 178 40.9 0.00051 KIAA1095 ( 1098 res) hk06736 (1098) 171 39.8 0.0012 KIAA0300 ( 2847 res) hf00389s1 (2847) 175 40.9 0.0014 KIAA1634 ( 874 res) fh21781(revised) ( 874) 153 36.7 0.0081 KIAA1222 ( 742 res) fh03567 ( 742) 151 36.3 0.0092 >>KIAA0583 ( 1952 res) af01829 (1952 aa) initn: 607 init1: 127 opt: 247 Z-score: 221.1 bits: 52.5 E(): 3.4e-07 Smith-Waterman score: 579; 27.160% identity (58.025% similar) in 486 aa overlap (45-516:1519-1949) 20 30 40 50 60 70 KIAA12 FSGSGLAMGLGSASASAWRRASQRWAWPLRSLRPGGDAR----EPRKIILHKGSTGLGFN : : .::: ::: ....:.. :: . KIAA05 SGTTTPEHPSVIDPLMEQDEGPSTPPAKQSSSRIAGDANKKTLEPRVVFIKKSQLELGVH 1490 1500 1510 1520 1530 1540 80 90 100 110 120 130 KIAA12 IVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSV . :: . .:.::. . .:: : :: :: .....:: : :.. . . . ..: KIAA05 LCGG-NLHGVFVAEVEDDSPAKGPDGLVPGDLILEYGSLDVRNKTVEEVYVEMLKPRDGV 1550 1560 1570 1580 1590 1600 140 150 160 170 180 190 KIAA12 TIVAQYRPEEYSRFESKIHDLREQMMNSSMSSGSGSLRTSEKRSLYVRALFDYDRTRDSC . .::::::... .. : :.:.::: ::: : KIAA05 RLKVQYRPEEFTKAKGLPGD-----------------------SFYIRAL--YDRLADV- 1610 1620 1630 1640 200 210 220 230 240 KIAA12 LPSQGLSFSYGDILHVINASDDEW---WQARLVTPHGESEQIGVIPSKKRVEKKERARLK : :::. :::.: .. . :.: . .... : : :::: .... ::. KIAA05 --EQELSFKKDDILYVDDTLPQGTFGSWMAWQLDENAQKIQRGQIPSKYVMDQEFSRRLS 1650 1660 1670 1680 1690 250 260 270 280 290 300 KIAA12 TVKFHARTGMIESNRSIKTKRKKSFRLSRKFPFYKSKENMAQESSIQEQGVTSNTSDSES . . ..: . :: . : :.. :.. . .: . . . . . : . KIAA05 MSEVK------DDNSATKTLSAAARR-----SFFRRKHKHKRSGSKDGKDLLALDAFSSD 1700 1710 1720 1730 1740 310 320 330 340 350 360 KIAA12 SSKGQEDAI-LSYEPVTRQEIHYARPVIILGPMKDRVNDDLISEFPHKFGSCVPHTTRPR : ::.. :.:. : . . :::.::::. : :.. :..: : :: : .. . KIAA05 SIPLFEDSVSLAYQRVQKVDCTALRPVLILGPLLDVVKEMLVNEAPGKFCRCPLEVMK-- 1750 1760 1770 1780 1790 1800 370 380 390 400 410 420 KIAA12 RDNEVDGQDYHFVVSREQMEKDIQDNKFIEAGQFNDNLYGTSIQSVRAVAERGKHCILDV .:.. .:. ..: :.. . . .. :.. :.. ..:...::.::. KIAA05 -------------ASQQAIERGVKDCLFVDYKRRSGHFDVTTVASIKEITEKNRHCLLDI 1810 1820 1830 1840 1850 430 440 450 460 470 480 KIAA12 SGNAIKRLQQAQLYPIAIFIKPKSIEALME------MNRRQTYEQANKIYDKAMKLEQEF . .::.::.. ..:::.:::. :: . . : . . : ..... .. :.:::::. KIAA05 APHAIERLHHMHIYPIVIFIHYKSAKHIKEQRDPIYLRDKVTQRHSKEQFEAAQKLEQEY 1860 1870 1880 1890 1900 1910 490 500 510 520 KIAA12 GEYFTAIVQGDSLEEIYNKIKQIIEDQSGHYIWVPSPEKL ..:::...:: .: : ..: ........ .:.:. KIAA05 SRYFTGVIQGGALSSICTQILAMVNQEQNKVLWIPACPL 1920 1930 1940 1950 >>KIAA1719 ( 1050 res) pf00330s1 (1050 aa) initn: 304 init1: 154 opt: 201 Z-score: 183.7 bits: 44.6 E(): 4.1e-05 Smith-Waterman score: 202; 23.207% identity (57.806% similar) in 237 aa overlap (46-263:138-371) 20 30 40 50 60 KIAA12 SGSGLAMGLGSASASAWRRASQRWAWPLRSLRPGGDAREPR------KIILHKGSTGLGF : : . .:: . :.: ....:: KIAA17 GIHLTRLRHDEIITLLKNVGERVVLEVEYELPPPAPENNPRIISKTVDVSLYKEGNSFGF 110 120 130 140 150 160 70 80 90 100 110 120 KIAA12 NIVGG--EDGEG---IFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALK . :: :::. . .... ::::: : :. :::.:::.:. :..:.: : :.:. KIAA17 VLRGGAHEDGHKSRPLVLTYVRPGGPADREGSLKVGDRLLSVDGIPLHGASHATALATLR 170 180 190 200 210 220 130 140 150 160 170 180 KIAA12 RAGQSVTIVAQYRPEEYSRFESKIHDLREQMMNSSMSSGSGSLRTSEKRSLYVRALFDYD . .. . . ..: . . : ..... :. . :: :. :: .... : KIAA17 QCSHEALFQVEYDVATPDTVANASGPLMVEIVKTPGSALGISLTTT---SLRNKSVITID 230 240 250 260 270 280 190 200 210 220 230 KIAA12 RTRDSCLPSQGLSFSYGDILHVINASDDE----WWQARLVTPHGESEQIGVIP---SKKR : . . . ... .. :: . :.... : ..:.. .:. .. ..: :.. KIAA17 RIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQSQRP 290 300 310 320 330 340 240 250 260 270 280 290 KIAA12 VEKKERARL-KTVKFHARTGMIESNRSIKTKRKKSFRLSRKFPFYKSKENMAQESSIQEQ .. .: ... .. ..: . : .: KIAA17 LRPSEAVKVQRSEQLHRWDPCVPSCHSPRPGHCRMPTWATPAGQDQSRSLSSTPFSSPTL 350 360 370 380 390 400 >>KIAA0147 ( 1630 res) ha01022s1 (1630 aa) initn: 311 init1: 156 opt: 196 Z-score: 177.2 bits: 44.1 E(): 9.4e-05 Smith-Waterman score: 196; 37.374% identity (63.636% similar) in 99 aa overlap (42-133:847-945) 20 30 40 50 60 70 KIAA12 ARKFSGSGLAMGLGSASASAWRRASQRWAWPLRSLRPGGDAREPRKIILHKGSTGLGFNI :: . : :. . : .. ::::.: KIAA01 VEPENAVTITPLRPEDDYSPRERRGGGLRLPLLPPESPGPLRQRHVACLARSERGLGFSI 820 830 840 850 860 870 80 90 100 110 120 KIAA12 VGGED------GE-GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALK .::. :. ::::: : :: : .: :. :::.::.:::.. .: :..:.. : KIAA01 AGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLT 880 890 900 910 920 930 130 140 150 160 170 180 KIAA12 RAGQSVTIVAQYRPEEYSRFESKIHDLREQMMNSSMSSGSGSLRTSEKRSLYVRALFDYD :. ..... KIAA01 AASPTIALLLEREAGGPLPPSPLPHSSPPTAAVATTSITTATPGVPGLPSLAPSLLAAAL 940 950 960 970 980 990 >>KIAA1526 ( 963 res) fj04743(revised) (963 aa) initn: 194 init1: 110 opt: 178 Z-score: 164.0 bits: 40.9 E(): 0.00051 Smith-Waterman score: 178; 39.655% identity (59.483% similar) in 116 aa overlap (21-133:167-274) 10 20 30 40 50 KIAA12 AARRERGAMERARKFSGSGLAMGLGSASASAWRRASQRWAWPLRSLRPGG : :: ... .:. . :. : : :: KIAA15 LLDSPVKRRLLPMLRLVIPRSDQLLFDQYTAEGLYLPATTPYRQPA--WGGP-DSAGPG- 140 150 160 170 180 190 60 70 80 90 100 KIAA12 DAREPRKIILH--KGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELRRGDRILSVN : : . :. :. ::::.: :: : : ::.::.. :. :. : :: ::.:: :: KIAA15 ---EVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEG-LRVGDQILRVN 200 210 220 230 240 110 120 130 140 150 160 KIAA12 GVNLRNATHEQAAAALKRAGQSVTIVAQYRPEEYSRFESKIHDLREQMMNSSMSSGSGSL .: .:: .:. ::: . . : : KIAA15 DKSLARVTHAEAVKALKGSKKLVLSVYSAGRIPGGYVTNHIYTWVDPQGRSISPPSGLPQ 250 260 270 280 290 300 >>KIAA1095 ( 1098 res) hk06736 (1098 aa) initn: 223 init1: 158 opt: 171 Z-score: 157.1 bits: 39.8 E(): 0.0012 Smith-Waterman score: 240; 40.164% identity (62.295% similar) in 122 aa overlap (48-154:270-391) 20 30 40 50 60 70 KIAA12 SGLAMGLGSASASAWRRASQRWAWPLRSLRPGGDAREPRKI--ILHKGSTGLGFNIVGGE ::: ..: ... .::. : .:::::.::. KIAA10 ELQMTALRYQKKFTEYSARLDSLSRCVAAPPGGKGEETKSLTLVLHRDSGSLGFNIIGGR 240 250 260 270 280 290 80 90 100 110 120 KIAA12 ------DG---EGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRA :: :::::: :. .::: : :. :::. ::: .: :::.::. :.: : KIAA10 PSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTA 300 310 320 330 340 350 130 140 150 160 170 180 KIAA12 GQSVTIVAQYRPEEYSRF----ESKIHDLREQMMNSSMSSGSGSLRTSEKRSLYVRALFD . ... . : . . : ::.. : : KIAA10 KEPIVVQVLRRTPRTKMFTPPSESQLVDTGTQTDITFEHIMALTKMSSPSPPVLDPYLLP 360 370 380 390 400 410 190 200 210 220 230 240 KIAA12 YDRTRDSCLPSQGLSFSYGDILHVINASDDEWWQARLVTPHGESEQIGVIPSKKRVEKKE KIAA10 EEHPSAHEYYDPNDYIGDIHQEMDREELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGI 420 430 440 450 460 470 >>KIAA0300 ( 2847 res) hf00389s1 (2847 aa) initn: 296 init1: 121 opt: 175 Z-score: 156.0 bits: 40.9 E(): 0.0014 Smith-Waterman score: 175; 32.143% identity (60.714% similar) in 140 aa overlap (42-174:583-719) 20 30 40 50 60 70 KIAA12 ARKFSGSGLAMGLGSASASAWRRASQRWAWPLRSLRPGGDAREPRKIILHKGSTGLGFNI : : .::. . . .::. ::::.: KIAA03 PQLLDSSSASQEYHIVKKSTRSLSTTQVESPWRLIRPS--VISIIGLYKEKGK-GLGFSI 560 570 580 590 600 80 90 100 110 120 KIAA12 VGGED---GE-GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALK--R .::.: :. ::::. :. .: : .:.:..::.::.:::. ... : ..: ..: : KIAA03 AGGRDCIRGQMGIFVKTIFPNGSAAEDGRLKEGDEILDVNGIPIKGLTFQEAIHTFKQIR 610 620 630 640 650 660 130 140 150 160 170 180 KIAA12 AGQSV-TIVAQYRPEEYSRFESKIHDLREQMMNSSMSSGSGSLRTSEKRSLYVRALFDYD .: : :. .. . . : : : . :.:... ..: : KIAA03 SGLFVLTVRTKLVSPSLTPCSTPTHMSRSASPNFNTSGGASAGGSDEGSSSSLGRKTPGP 670 680 690 700 710 720 190 200 210 220 230 240 KIAA12 RTRDSCLPSQGLSFSYGDILHVINASDDEWWQARLVTPHGESEQIGVIPSKKRVEKKERA KIAA03 KDRIVMEVTLNKEPRVGLGIGACCLALENSPPGIYIHSLAPGSVAKMESNLSRGDQILEV 730 740 750 760 770 780 >>KIAA1634 ( 874 res) fh21781(revised) (874 aa) initn: 223 init1: 123 opt: 153 Z-score: 142.4 bits: 36.7 E(): 0.0081 Smith-Waterman score: 154; 25.862% identity (64.655% similar) in 116 aa overlap (58-171:476-588) 30 40 50 60 70 80 KIAA12 SASAWRRASQRWAWPLRSLRPGGDAREPRKIILHKGSTGLGFNIVGGEDG--EGIFVSFI ..:.: .:.:: ..:: :: ..:... : KIAA16 SGSPKLDPSEVYLKSKTLYEDKPPNTKDLDVFLRKQESGFGFRVLGG-DGPDQSIYIGAI 450 460 470 480 490 500 90 100 110 120 130 140 KIAA12 LAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPEEYSRFE . : :. .:.:: .:... ..:. ... .:.:. . :... .. : . . : KIAA16 IPLGAAEKDGRLRAADELMCIDGIPVKGKSHKQVLDLMTTAARNGHVLLTVRRKIF-YGE 510 520 530 540 550 560 150 160 170 180 190 200 KIAA12 SKIHDLREQMMNSSMSSGSGSLRTSEKRSLYVRALFDYDRTRDSCLPSQGLSFSYGDILH .. .: : . :... :: : .: KIAA16 KQPEDDSSQAFISTQN-GSPRLNRAEVPARPAPQEPYDVVLQRKENEGFGFVILTSKNKP 570 580 590 600 610 620 >>KIAA1222 ( 742 res) fh03567 (742 aa) initn: 146 init1: 107 opt: 151 Z-score: 141.5 bits: 36.3 E(): 0.0092 Smith-Waterman score: 151; 31.068% identity (66.019% similar) in 103 aa overlap (60-154:151-253) 30 40 50 60 70 80 KIAA12 SAWRRASQRWAWPLRSLRPGGDAREPRKIILHKGSTGLGFNIVG---GEDGE----GIFV :.: :::..:.: : :. :::: KIAA12 RRNDEVDPVAASAEYELEKRVEKLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFV 130 140 150 160 170 180 90 100 110 120 130 140 KIAA12 SFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVT-IVAQYRPEEY . . :: :. .:... .:.:. :.:..: ..:.. ::..:. . .: .... .: . KIAA12 KTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREKPGQV 190 200 210 220 230 240 150 160 170 180 190 200 KIAA12 SRFESKIHDLREQMMNSSMSSGSGSLRTSEKRSLYVRALFDYDRTRDSCLPSQGLSFSYG :. . : . :: KIAA12 SEVAQLISQTLEQERRQRELLEQHYAQYDADDDETGEYATDEEEDEVGPVLPGSDMAIEV 250 260 270 280 290 300 520 residues in 1 query sequences 1986985 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:14:05 2008 done: Thu Dec 18 15:14:06 2008 Total Scan time: 0.460 Total Display time: 0.110 Function used was FASTA [version 34.26.5 April 26, 2007]