hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21001620/chunk_1/iprscan-20080501-21001620.nocrc
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Query sequence: KIAA1230
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00536.20.fs SAM domain (Sterile alpha motif)               151.8    4.3e-44   3
PF00536.20.ls SAM domain (Sterile alpha motif)               144.4    2.9e-40   2
PF07647.7.fs SAM domain (Sterile alpha motif)               107.2    8.5e-31   3
PF07647.7.ls SAM domain (Sterile alpha motif)               107.8      3e-29   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07647.7.ls   1/3     565   632 ..     1    72 []    18.1    0.017
PF00536.20.fs   1/3     566   630 ..     1    65 []    65.7    1e-18
PF00536.20.ls   1/2     566   630 ..     1    65 []    67.7  3.5e-17
PF07647.7.ls   2/3     637   703 ..     1    72 []    26.9  6.6e-05
PF00536.20.fs   2/3     638   701 ..     1    65 []    74.7  2.3e-21
PF00536.20.ls   2/2     638   701 ..     1    65 []    76.7  6.9e-20
PF07647.7.fs   2/3     645   701 ..     9    70 ..    30.3  3.1e-08
PF07647.7.fs   3/3     725   797 ..     1    72 []    60.8  3.6e-17
PF07647.7.ls   3/3     725   797 ..     1    72 []    62.8    1e-15

Alignments of top-scoring domains:
PF07647.7.ls: domain 1 of 3, from 565 to 632: score 18.1, E = 0.017
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa
                         w+ e+v++WL + gl g Y  +  ++ i +++ l l+ +++dL 
    KIAA1230   565    FAKWTKEQVCNWLMEQGL-GSYLNS-GKHWIASGQTL-LQASQQDL- 607  

                   klalGitsvghRkkilkkiqelkqq<-*
                   + +lGi    hRkk+  ++q l  +   
    KIAA1230   608 EKELGIKHSLHRKKLQLALQALGSE    632  

PF00536.20.fs: domain 1 of 3, from 566 to 630: score 65.7, E = 1e-18
                   *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLed.l
                        w+ e+V++WL + glg Y ++  +++  +g+tllq +++DLe++l
    KIAA1230   566    AKWTKEQVCNWLMEQGLGSYLNSG-KHWIASGQTLLQASQQDLEKeL 611  

                   GvtllGHrkKIlssIqgLk<-*
                   G+++  HrkK+++++q L    
    KIAA1230   612 GIKHSLHRKKLQLALQALG    630  

PF00536.20.ls: domain 1 of 2, from 566 to 630: score 67.7, E = 3.5e-17
                   *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLed.l
                        w+ e+V++WL + glg Y ++  +++  +g+tllq +++DLe++l
    KIAA1230   566    AKWTKEQVCNWLMEQGLGSYLNSG-KHWIASGQTLLQASQQDLEKeL 611  

                   GvtllGHrkKIlssIqgLk<-*
                   G+++  HrkK+++++q L    
    KIAA1230   612 GIKHSLHRKKLQLALQALG    630  

PF07647.7.ls: domain 2 of 3, from 637 to 703: score 26.9, E = 6.6e-05
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa
                          +++ v+ WL+ igl +qYk  F +  ++g ++l +++t +dL 
    KIAA1230   637    HGKLDFNWVTRWLDDIGL-PQYKTQFDEGRVDG-RML-HYMTVDDL- 679  

                   klalGitsvghRkkilkkiqelkqq<-*
                   +  l++ sv h + i ++iq l+     
    KIAA1230   680 L-SLKVVSVLHHLSIKRAIQVLRIN    703  

PF00536.20.fs: domain 2 of 3, from 638 to 701: score 74.7, E = 2.3e-21
                   *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG
                      +  +f+ V  WL++igl+qY+ +F   g++dg++l  +t +DL++l+
    KIAA1230   638    GKLDFNWVTRWLDDIGLPQYKTQF-DEGRVDGRMLHYMTVDDLLSLK 683  

                   vtllGHrkKIlssIqgLk<-*
                   v+++ H++ I ++Iq L+   
    KIAA1230   684 VVSVLHHLSIKRAIQVLR    701  

PF00536.20.ls: domain 2 of 2, from 638 to 701: score 76.7, E = 6.9e-20
                   *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG
                      +  +f+ V  WL++igl+qY+ +F   g++dg++l  +t +DL++l+
    KIAA1230   638    GKLDFNWVTRWLDDIGLPQYKTQF-DEGRVDGRMLHYMTVDDLLSLK 683  

                   vtllGHrkKIlssIqgLk<-*
                   v+++ H++ I ++Iq L+   
    KIAA1230   684 VVSVLHHLSIKRAIQVLR    701  

PF07647.7.fs: domain 2 of 3, from 645 to 701: score 30.3, E = 3.1e-08
                   *->vaeWLesiglegqYkdnFsdqgitglellllrlteedLaklalGits
                      v+ WL+ igl +qYk  F +  ++g ++l +++t +dL +  l++ s
    KIAA1230   645    VTRWLDDIGL-PQYKTQFDEGRVDG-RML-HYMTVDDL-L-SLKVVS 686  

                   vghRkkilkkiqelk<-*
                   v h + i ++iq l+   
    KIAA1230   687 VLHHLSIKRAIQVLR    701  

PF07647.7.fs: domain 3 of 3, from 725 to 797: score 60.8, E = 3.6e-17
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglelll.lrlteedL
                      v  w++++v+eWL+s++l ++Y++n+++ g++g+ ++l++r++ e++
    KIAA1230   725    VQKWTNHRVMEWLRSVDL-AEYAPNLRGSGVHGGLMVLePRFNVETM 770  

                   a.klalGitsvghRkkilkkiqelkqq<-*
                   a++l ++++++  R+++ ++++ l++    
    KIAA1230   771 AqLLNIPPNKTLLRRHLATHFNLLIGA    797  

PF07647.7.ls: domain 3 of 3, from 725 to 797: score 62.8, E = 1e-15
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglelll.lrlteedL
                      v  w++++v+eWL+s++l ++Y++n+++ g++g+ ++l++r++ e++
    KIAA1230   725    VQKWTNHRVMEWLRSVDL-AEYAPNLRGSGVHGGLMVLePRFNVETM 770  

                   a.klalGitsvghRkkilkkiqelkqq<-*
                   a++l ++++++  R+++ ++++ l++    
    KIAA1230   771 AqLLNIPPNKTLLRRHLATHFNLLIGA    797  

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