hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-20552003/chunk_1/iprscan-20080501-20552003.nocrc
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Query sequence: KIAA1227
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 136.9    2.2e-36   9
SM00225                                                  75.9      5e-18   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00225      1/1      33   129 ..     1   114 []    75.9    5e-18
SM00355      1/9     549   572 ..     1    23 []    18.5     0.93
SM00355      2/9     578   601 ..     1    23 []    16.8        3
SM00355      3/9     673   695 ..     1    23 []    25.0    0.011
SM00355      4/9     725   745 ..     1    23 []     0.2    3e+02
SM00355      5/9     751   771 ..     1    23 []     0.8  2.6e+02
SM00355      6/9     778   801 ..     1    23 []    18.4     0.99
SM00355      7/9     912   932 ..     1    23 []     9.6       26
SM00355      8/9     940   962 ..     1    23 []    23.6    0.028
SM00355      9/9    1046  1068 ..     1    23 []    24.0    0.022

Alignments of top-scoring domains:
SM00225: domain 1 of 1, from 33 to 129: score 75.9, E = 5e-18
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cDv l+vg+         +kf+a  Hk vLaa+   S+yF++lf+++
    KIAA1227    33    CDVLLIVGD---------QKFRA--HKNVLAAS---SEYFQSLFTNk 65   

                   .......ieldDeallievspeaFralLnflYt.kldlpeedvenveelL
                   ++++++  +ld+        p+aF+ +Ln++Y+++l++ ++   ++  + 
    KIAA1227    66 enesqtvFQLDF------CEPDAFDNVLNYIYSsSLFVEKS---SLAAVQ 106  

                   elAdfldSYGqip.lvelCeefllknl<-*
                   el   l    +i  l+  + +  +      
    KIAA1227   107 ELGYSL----GISfLTNIVSKTPQAPF    129  

SM00355: domain 1 of 9, from 549 to 572: score 18.5, E = 0.93
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      +kC++ C k f+s   L rH+   H   
    KIAA1227   549    FKCKH-CLKIFRSTaGLHRHVNmYH    572  

SM00355: domain 2 of 9, from 578 to 601: score 16.8, E = 3
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y C+i C+k+f++      H +++H   
    KIAA1227   578    YACDI-CHKRFHTNfKVWTHCQtQH    601  

SM00355: domain 3 of 9, from 673 to 695: score 25.0, E = 0.011
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgk ++  +++k+H+++H   
    KIAA1227   673    YICTY-CGKAYRFLsQFKQHIKMH    695  

SM00355: domain 4 of 9, from 725 to 745: score 0.2, E = 3e+02
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C + C+ + ss  +   H r     
    KIAA1227   725    YQCRL-CNAKLSSLlEQGSHER--    745  

SM00355: domain 5 of 9, from 751 to 771: score 0.8, E = 2.6e+02
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                       +Cp+ C+ +f s++  ++H       
    KIAA1227   751    AVCPY-CSLRFFSPeLKQEHES--    771  

SM00355: domain 6 of 9, from 778 to 801: score 18.4, E = 0.99
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ++C + C ++f+s  +  rH+ +vH   
    KIAA1227   778    LTCLE-CMRTFKSSfSIWRHQVeVH    801  

SM00355: domain 7 of 9, from 912 to 932: score 9.6, E = 26
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ Cgk f+ +++L+rH+      
    KIAA1227   912    WPCEK-CGKMFTVHkQLERHQE--    932  

SM00355: domain 8 of 9, from 940 to 962: score 23.6, E = 0.028
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ C+k f++   L  H ++H   
    KIAA1227   940    FICHV-CNKAFRTNfRLWSHFQSH    962  

SM00355: domain 9 of 9, from 1046 to 1068: score 24.0, E = 0.022
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ C+++f+++ +L  H ++H   
    KIAA1227  1046    FMCKL-CHRTFKTAfSLWSHEQTH    1068 

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