hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-20552003/chunk_1/iprscan-20080501-20552003.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1227 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 166.8 5e-47 9 PF00096.16.fs Zinc finger, C2H2 type 149.1 1.1e-41 9 PF00651.21.ls BTB/POZ domain 103.8 4.7e-28 1 PF00651.21.fs BTB/POZ domain 102.0 5.7e-28 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00651.21.fs 1/1 23 129 .. 1 135 [] 102.0 5.7e-28 PF00651.21.ls 1/1 23 129 .. 1 135 [] 103.8 4.7e-28 PF00096.16.ls 1/9 549 572 .. 1 24 [] 22.4 0.0015 PF00096.16.ls 3/9 673 695 .. 1 24 [] 30.4 5.9e-06 PF00096.16.fs 3/9 673 695 .. 1 24 [] 28.4 7.9e-06 PF00096.16.fs 7/9 912 935 .. 1 24 [] 24.0 9.8e-05 PF00096.16.ls 7/9 912 935 .. 1 24 [] 26.0 0.00012 PF00096.16.ls 8/9 940 962 .. 1 24 [] 22.6 0.0013 PF00096.16.fs 9/9 1046 1068 .. 1 24 [] 22.7 0.00021 PF00096.16.ls 9/9 1046 1068 .. 1 24 [] 24.6 0.00032 Alignments of top-scoring domains: PF00651.21.fs: domain 1 of 1, from 23 to 129: score 102.0, E = 5.7e-28 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal lne r++g+lcDV L vgd +kf+AHK vLaa+S+YF++l KIAA1227 23 LNEERLKGQLCDVLLIVGD--------QKFRAHKNVLAASSEYFQSL 61 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks Ft++ e+ s++ + l++ +p++f ++L++iY++ l+++ KIAA1227 62 FTNK-------ENESQT-VFQLDFCEPDAFDNVLNYIYSSSLFVE----- 98 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* ++ ++++ +++ l i +l++++ + + KIAA1227 99 ------KSSLAAVQELG-YSLGISFLTNIVSKTPQAPF 129 PF00651.21.ls: domain 1 of 1, from 23 to 129: score 103.8, E = 4.7e-28 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal lne r++g+lcDV L vgd +kf+AHK vLaa+S+YF++l KIAA1227 23 LNEERLKGQLCDVLLIVGD--------QKFRAHKNVLAASSEYFQSL 61 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks Ft++ e+ s++ + l++ +p++f ++L++iY++ l+++ KIAA1227 62 FTNK-------ENESQT-VFQLDFCEPDAFDNVLNYIYSSSLFVE----- 98 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* ++ ++++ +++ l i +l++++ + + KIAA1227 99 ------KSSLAAVQELG-YSLGISFLTNIVSKTPQAPF 129 PF00096.16.ls: domain 1 of 9, from 549 to 572: score 22.4, E = 0.0015 *->ykCpfdCgksFsrksnLkrHlrt.H<-* +kC+ +C k F++ + L+rH ++ H KIAA1227 549 FKCK-HCLKIFRSTAGLHRHVNMyH 572 PF00096.16.ls: domain 3 of 9, from 673 to 695: score 30.4, E = 5.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+++ s++k+H+++H KIAA1227 673 YICT-YCGKAYRFLSQFKQHIKMH 695 PF00096.16.fs: domain 3 of 9, from 673 to 695: score 28.4, E = 7.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+++ s++k+H+++H KIAA1227 673 YICT-YCGKAYRFLSQFKQHIKMH 695 PF00096.16.fs: domain 7 of 9, from 912 to 935: score 24.0, E = 9.8e-05 *->ykCpfdCgksFsrksnLkrHlrt.H<-* C+ +Cgk+F+ +++L+rH+ + KIAA1227 912 WPCE-KCGKMFTVHKQLERHQELlC 935 PF00096.16.ls: domain 7 of 9, from 912 to 935: score 26.0, E = 0.00012 *->ykCpfdCgksFsrksnLkrHlrt.H<-* C+ +Cgk+F+ +++L+rH+ + KIAA1227 912 WPCE-KCGKMFTVHKQLERHQELlC 935 PF00096.16.ls: domain 8 of 9, from 940 to 962: score 22.6, E = 0.0013 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +C+k+F+++ L +H ++H KIAA1227 940 FICH-VCNKAFRTNFRLWSHFQSH 962 PF00096.16.fs: domain 9 of 9, from 1046 to 1068: score 22.7, E = 0.00021 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ C+++F++ +L +H +tH KIAA1227 1046 FMCK-LCHRTFKTAFSLWSHEQTH 1068 PF00096.16.ls: domain 9 of 9, from 1046 to 1068: score 24.6, E = 0.00032 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ C+++F++ +L +H +tH KIAA1227 1046 FMCK-LCHRTFKTAFSLWSHEQTH 1068 //