hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-20520441/chunk_1/iprscan-20080501-20520441.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1225 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00560.23.ls Leucine Rich Repeat 164.6 2.4e-46 16 PF00560.23.fs Leucine Rich Repeat 134.7 2.4e-37 16 PF00595.14.fs PDZ domain (Also known as DHR or GLGF) 57.9 1.3e-15 1 PF00595.14.ls PDZ domain (Also known as DHR or GLGF) 59.9 7.8e-15 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00560.23.fs 2/16 47 68 .. 1 24 [] 12.4 0.025 PF00560.23.ls 2/16 47 68 .. 1 24 [] 14.2 0.43 PF00560.23.ls 3/16 70 91 .. 1 24 [] 13.0 0.98 PF00560.23.fs 3/16 70 91 .. 1 24 [] 11.1 0.055 PF00560.23.fs 4/16 93 114 .. 1 24 [] 13.4 0.013 PF00560.23.ls 4/16 93 114 .. 1 24 [] 15.3 0.21 PF00560.23.ls 6/16 139 160 .. 1 24 [] 10.5 2.9 PF00560.23.ls 7/16 162 183 .. 1 24 [] 10.2 3.2 PF00560.23.fs 8/16 185 206 .. 1 24 [] 11.4 0.046 PF00560.23.ls 8/16 185 206 .. 1 24 [] 13.3 0.85 PF00560.23.ls 10/16 231 252 .. 1 24 [] 10.9 2.4 PF00560.23.ls 11/16 254 275 .. 1 24 [] 11.4 2 PF00560.23.ls 12/16 277 298 .. 1 24 [] 9.0 5.4 PF00560.23.ls 13/16 300 321 .. 1 24 [] 10.3 3.1 PF00560.23.ls 15/16 346 367 .. 1 24 [] 10.5 2.8 PF00560.23.fs 16/16 369 390 .. 1 24 [] 14.9 0.0051 PF00560.23.ls 16/16 369 390 .. 1 24 [] 16.7 0.076 PF00595.14.fs 1/1 1282 1366 .. 1 86 [] 57.9 1.3e-15 PF00595.14.ls 1/1 1282 1366 .. 1 86 [] 59.9 7.8e-15 Alignments of top-scoring domains: PF00560.23.fs: domain 2 of 16, from 47 to 68: score 12.4, E = 0.025 *->nLeeLdLsgCNpsltgslpssl.nl<-* +LeeL+L+ N +++ +lp+ l n+ KIAA1225 47 TLEELYLDA-N-QIE-ELPKQLfNC 68 PF00560.23.ls: domain 2 of 16, from 47 to 68: score 14.2, E = 0.43 *->nLeeLdLsgCNpsltgslpssl.nl<-* +LeeL+L+ N +++ +lp+ l n+ KIAA1225 47 TLEELYLDA-N-QIE-ELPKQLfNC 68 PF00560.23.ls: domain 3 of 16, from 70 to 91: score 13.0, E = 0.98 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L +L+L + N lt +lp+s+ nl KIAA1225 70 SLHKLSLPD-N-DLT-TLPASIaNL 91 PF00560.23.fs: domain 3 of 16, from 70 to 91: score 11.1, E = 0.055 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L +L+L + N lt +lp+s+ nl KIAA1225 70 SLHKLSLPD-N-DLT-TLPASIaNL 91 PF00560.23.fs: domain 4 of 16, from 93 to 114: score 13.4, E = 0.013 *->nLeeLdLsgCNpsltgslpssl.nl<-* nL+eLd+s N +++ ++p++++n+ KIAA1225 93 NLRELDVSK-N-GIQ-EFPENIkNC 114 PF00560.23.ls: domain 4 of 16, from 93 to 114: score 15.3, E = 0.21 *->nLeeLdLsgCNpsltgslpssl.nl<-* nL+eLd+s N +++ ++p++++n+ KIAA1225 93 NLRELDVSK-N-GIQ-EFPENIkNC 114 PF00560.23.ls: domain 6 of 16, from 139 to 160: score 10.5, E = 2.9 *->nLeeLdLsgCNpsltgslpssl.nl<-* nL+ L+L++ l+ lp++++ l KIAA1225 139 NLTQLYLND-A-FLE-FLPANFgRL 160 PF00560.23.ls: domain 7 of 16, from 162 to 183: score 10.2, E = 3.2 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L++L+L+ N +l + lp+ + l KIAA1225 162 KLQILELRE-N-QL-KMLPKTMnRL 183 PF00560.23.fs: domain 8 of 16, from 185 to 206: score 11.4, E = 0.046 *->nLeeLdLsgCNpsltgslpssl.nl<-* +Le LdL++ N +t ++p+ l+ l KIAA1225 185 QLERLDLGS-N-EFT-EVPEVLeQL 206 PF00560.23.ls: domain 8 of 16, from 185 to 206: score 13.3, E = 0.85 *->nLeeLdLsgCNpsltgslpssl.nl<-* +Le LdL++ N +t ++p+ l+ l KIAA1225 185 QLERLDLGS-N-EFT-EVPEVLeQL 206 PF00560.23.ls: domain 10 of 16, from 231 to 252: score 10.9, E = 2.4 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L++Ld+s N +++ ++++++ + KIAA1225 231 QLTYLDVSK-N-NIE-MVEEGIsTC 252 PF00560.23.ls: domain 11 of 16, from 254 to 275: score 11.4, E = 2 *->nLeeLdLsgCNpsltgslpssl.nl<-* nL+ L Ls+ N sl+ lp+ +++l KIAA1225 254 NLQDLLLSS-N-SLQ-QLPETIgSL 275 PF00560.23.ls: domain 12 of 16, from 277 to 298: score 9.0, E = 5.4 *->nLeeLdLsgCNpsltgslpssl.nl<-* n+++L ++ N +l lp+s+++l KIAA1225 277 NITTLKIDE-N-QLM-YLPDSIgGL 298 PF00560.23.ls: domain 13 of 16, from 300 to 321: score 10.3, E = 3.1 *->nLeeLdLsgCNpsltgslpssl.nl<-* ++eeLd s N ++ lpss++ l KIAA1225 300 SVEELDCSF-N-EVE-ALPSSIgQL 321 PF00560.23.ls: domain 15 of 16, from 346 to 367: score 10.5, E = 2.8 *->nLeeLdLsgCNpsltgslpssl.nl<-* n+++L L++ N +l+ +lp++ +++ KIAA1225 346 NITVLFLHS-N-KLE-TLPEEMgDM 367 PF00560.23.fs: domain 16 of 16, from 369 to 390: score 14.9, E = 0.0051 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L++++Ls+ N +l ++lp s+++l KIAA1225 369 KLKVINLSD-N-RL-KNLPFSFtKL 390 PF00560.23.ls: domain 16 of 16, from 369 to 390: score 16.7, E = 0.076 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L++++Ls+ N +l ++lp s+++l KIAA1225 369 KLKVINLSD-N-RL-KNLPFSFtKL 390 PF00595.14.fs: domain 1 of 1, from 1282 to 1366: score 57.9, E = 1.3e-15 *->evtlekedkrgglGfsikggsdkga......dkgifvsevlpGsgaA v++e k lGfsi+gg ++++++ +++d gifv++v+p g+A KIAA1225 1282 RVRVE---KDPELGFSISGGVGGRGnpfrpdDDGIFVTRVQPE-GPA 1324 eagGrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* + Lq+GD+I++ NG ++ n++h +av +lk + +v L + KIAA1225 1325 SKL--LQPGDKIIQANGYSFINIEHGQAVSLLKTFQN-TVELIIV 1366 PF00595.14.ls: domain 1 of 1, from 1282 to 1366: score 59.9, E = 7.8e-15 *->evtlekedkrgglGfsikggsdkga......dkgifvsevlpGsgaA v++e k lGfsi+gg ++++++ +++d gifv++v+p g+A KIAA1225 1282 RVRVE---KDPELGFSISGGVGGRGnpfrpdDDGIFVTRVQPE-GPA 1324 eagGrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* + Lq+GD+I++ NG ++ n++h +av +lk + +v L + KIAA1225 1325 SKL--LQPGDKIIQANGYSFINIEHGQAVSLLKTFQN-TVELIIV 1366 //