# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh02652.fasta.huge -Q ../query/KIAA1224.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1224, 997 aa vs ./tmplib.24314 library 1986508 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 13.6649+/-0.0106; mu= -22.9272+/- 0.713 mean_var=721.9696+/-174.422, 0's: 0 Z-trim: 4 B-trim: 0 in 0/40 Lambda= 0.047733 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1886 ( 655 res) fk01837 ( 655) 2711 202.3 1.7e-52 >>KIAA1886 ( 655 res) fk01837 (655 aa) initn: 2522 init1: 1001 opt: 2711 Z-score: 1034.5 bits: 202.3 E(): 1.7e-52 Smith-Waterman score: 2819; 62.197% identity (76.462% similar) in 701 aa overlap (312-997:4-655) 290 300 310 320 330 KIAA12 AAGMTPSGMSGPPMGMNQPRPPGISPFGTHGQRMPQQTYPGP-RPQSLPIQNIKRPY--- :::.::. :::: . : :: :..:: : KIAA18 LYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEV 10 20 30 340 350 360 370 380 390 KIAA12 -PGEPNYGNQQYGPNS-QFPTQPGQYPAPNPPRPLTSPNYPGQRMPSQPSSGQ---YPPP ::. . ::.:.. :: .::: ::: ::.:::.:.: : . : : : KIAA18 YPGQQYLQGGQYAPSTAQFAPSPGQPPAP-------SPSYPGHRLPLQQGMTQSLSVPGP 40 50 60 70 80 400 410 420 430 440 450 KIAA12 TVNMGQYYKPEQFNGQNNTFSGSSYSNYSQGNVNRPPRPVPVANYPHSPVPGNPTPPMTP : : .::: : .: .:: ::.:::::::::: KIAA18 T---GLHYKPT--------------------------RSIP--GYPSSPLPGNPTPPMTP 90 100 110 460 470 480 490 500 510 KIAA12 GSSIPPYLSPSQDVKPPFPPDIKPNMSALPPPPANHN--DELRLTFPVRDGVVLEPFRLE .::.: :.::.:.:: :: ::.:::...: :.. . ::::::::::::::::::::. KIAA18 SSSVP-YMSPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDELRLTFPVRDGVVLEPFRLQ 120 130 140 150 160 170 520 530 540 550 560 570 KIAA12 HNLAVSNHVFHLRPTVHQTLMWRSDLELQFKCYHHEDRQMNTNWPASVQVSVNATPLTIE ::::::::::.:: .:..::. : :::::::::::::::::::::::::::::::::::: KIAA18 HNLAVSNHVFQLRDSVYKTLIMRPDLELQFKCYHHEDRQMNTNWPASVQVSVNATPLTIE 180 190 200 210 220 230 580 590 600 610 620 630 KIAA12 RGDNKTSHKPLHLKHVCQPGRNTIQITVTACCCSHLFVLQLVHRPSVRSVLQGLLKKRLL :::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::: KIAA18 RGDNKTSHKPLYLKHVCQPGRNTIQITVTACCCSHLFVLQLVHRPSVRSVLQGLLKKRLL 240 250 260 270 280 290 640 650 660 670 680 690 KIAA12 PAEHCITKIKRNFSSVAASSGNTTLNGEDGVEQTAIKVSLKCPITFRRIQLPARGHDCKH ::::::::::::::: .. :. :::::::::::::::::::::::::::::::::.: KIAA18 PAEHCITKIKRNFSS-GTIPGTPGPNGEDGVEQTAIKVSLKCPITFRRIQLPARGHDCRH 300 310 320 330 340 350 700 710 720 730 740 750 KIAA12 VQCFDLESYLQLNCERGTWRCPVCNKTALLEGLEVDQYMWGILNAIQHSEFEEVTIDPTC .:::::::::::::::::::::::::::::::::::::: ::: ::.:..::.:::::: KIAA18 IQCFDLESYLQLNCERGTWRCPVCNKTALLEGLEVDQYMLGILIYIQNSDYEEITIDPTC 360 370 380 390 400 410 760 770 780 790 800 KIAA12 SWRPVPIKSDLHIKDDPDGIPSKRFKTMSPSQMIMPNVMEMIAALGPGPSPY-PLPPPPG ::.:::.: :.:::..::: :: .:.::....::.::::::::::: .:. :: :: KIAA18 SWKPVPVKPDMHIKEEPDGPALKRCRTVSPAHVLMPSVMEMIAALGPGAAPFAPLQPPSV 420 430 440 450 460 470 810 820 830 840 850 860 KIAA12 GTNSNDYSSQGNNYQGHGNF--DFPHGNPGGTSMNDFMHGPPQLSHPPDMPNNMAALEKP . : :: .::... : :.: .:: :. .. .: ::: .:. :.:... . :: KIAA18 PAPS-DYPGQGSSFLGPGTFPESFPPTMPSTPTLAEFTPGPPPISYQSDIPSSLLTSEKS 480 490 500 510 520 530 870 880 890 900 910 920 KIAA12 LSH-PMQETMPHAGSSDQPHPSIQQGLHVPHPSSQSGPPLHHSGAPPPPPSQPPRQPPQA . : : : :: : : :::. . .. :: ::::. ::: : :: KIAA18 TACLPSQ--MAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHHSN--PPPAS---RQSLGQ 540 550 560 570 580 930 940 950 960 970 980 KIAA12 APSSHPHSDLTFNPSSALEGQAGAQGASDMPEPSLDLLPELTNPDELLSYLDPPDLPSNS : : : ..:.:.:.... : . .::.. :::.::::::::::::::::: :::::.:. KIAA18 A-SLGPTGELAFSPATGVMGPPSMSGAGEAPEPALDLLPELTNPDELLSYLGPPDLPTNN 590 600 610 620 630 640 990 KIAA12 NDDLLSLFENN ::::::::::: KIAA18 NDDLLSLFENN 650 997 residues in 1 query sequences 1986508 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:13:47 2008 done: Thu Dec 18 15:13:47 2008 Total Scan time: 0.650 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]