hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-20483223/chunk_1/iprscan-20080501-20483223.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1223 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00248 473.4 1.1e-137 17 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00248 1/17 204 233 .. 1 30 [] 27.9 0.0014 SM00248 2/17 237 266 .. 1 30 [] 34.2 1.7e-05 SM00248 3/17 270 299 .. 1 30 [] 24.8 0.012 SM00248 4/17 303 332 .. 1 30 [] 24.6 0.014 SM00248 5/17 336 365 .. 1 30 [] 34.6 1.4e-05 SM00248 6/17 369 403 .. 1 30 [] 25.4 0.008 SM00248 7/17 407 436 .. 1 30 [] 35.8 6e-06 SM00248 8/17 440 469 .. 1 30 [] 18.5 0.94 SM00248 9/17 473 502 .. 1 30 [] 22.6 0.057 SM00248 10/17 506 535 .. 1 30 [] 27.3 0.0021 SM00248 11/17 539 568 .. 1 30 [] 28.9 0.00071 SM00248 12/17 572 601 .. 1 30 [] 33.0 4.1e-05 SM00248 13/17 605 634 .. 1 30 [] 19.4 0.5 SM00248 14/17 638 667 .. 1 30 [] 34.9 1.1e-05 SM00248 15/17 671 700 .. 1 30 [] 25.8 0.0059 SM00248 16/17 704 733 .. 1 30 [] 36.5 3.6e-06 SM00248 17/17 737 767 .. 1 30 [] 19.2 0.6 Alignments of top-scoring domains: SM00248: domain 1 of 17, from 204 to 233: score 27.9, E = 0.0014 *->dGrTpLHlAaengnlevvklLldkgadina<-* +GrT L Aa++g+l+vv+lL+++gad+++ KIAA1223 204 NGRTLLANAAYSGSLDVVNLLVSRGADLEI 233 SM00248: domain 2 of 17, from 237 to 266: score 34.2, E = 1.7e-05 *->dGrTpLHlAaengnlevvklLldkgadina<-* +G+TpL lAa+ g+ +vv++L+ ga+in KIAA1223 237 HGHTPLTLAARQGHTKVVNCLIGCGANINH 266 SM00248: domain 3 of 17, from 270 to 299: score 24.8, E = 0.012 *->dGrTpLHlAaengnlevvklLldkgadina<-* dG+T+L Aa g+ evv +Ll +g+ +++ KIAA1223 270 DGWTALRSAAWGGHTEVVSALLYAGVKVDC 299 SM00248: domain 4 of 17, from 303 to 332: score 24.6, E = 0.014 *->dGrTpLHlAaengnlevvklLldkgadina<-* d rT L Aa g++++v Ll++ga++n+ KIAA1223 303 DSRTVLRAAAWGGHEDIVLNLLQHGAEVNK 332 SM00248: domain 5 of 17, from 336 to 365: score 34.6, E = 1.4e-05 *->dGrTpLHlAaengnlevvklLldkgadina<-* +GrT+L Aa+ g+ e+v++Lld+ga++n KIAA1223 336 EGRTALIAAAYMGHREIVEHLLDHGAEVNH 365 SM00248: domain 6 of 17, from 369 to 403: score 25.4, E = 0.008 *->dGrTpLHlAaen.....gnlevvklLldkgadina<-* dGrT+L +Aa + ++g+ +vv lL+d+ga+++ KIAA1223 369 DGRTALSVAALCvpaskGHASVVSLLIDRGAEVDH 403 SM00248: domain 7 of 17, from 407 to 436: score 35.8, E = 6e-06 *->dGrTpLHlAaengnlevvklLldkgadina<-* dG+TpL +Aa++g+++vv lLl+ gad++ KIAA1223 407 DGMTPLLVAAYEGHVDVVDLLLEGGADVDH 436 SM00248: domain 8 of 17, from 440 to 469: score 18.5, E = 0.94 *->dGrTpLHlAaengnlevvklLldkgadina<-* +GrTpL Aa+ g+ +vv+ Ll ga ++ KIAA1223 440 NGRTPLLAAASMGHASVVNTLLFWGAAVDS 469 SM00248: domain 9 of 17, from 473 to 502: score 22.6, E = 0.057 *->dGrTpLHlAaengnlevvklLldkgadina<-* +GrT L +A + gn+evv+ Lld+g d n KIAA1223 473 EGRTVLSIASAQGNVEVVRTLLDRGLDENH 502 SM00248: domain 10 of 17, from 506 to 535: score 27.3, E = 0.0021 *->dGrTpLHlAaengnlevvklLldkgadina<-* G+TpLH+Aa +g+ ++++L++ ga n+ KIAA1223 506 AGWTPLHMAAFEGHRLICEALIEQGARTNE 535 SM00248: domain 11 of 17, from 539 to 568: score 28.9, E = 0.00071 *->dGrTpLHlAaengnlevvklLldkgadina<-* dGr p+ lA ++g++++v++Ll+++ +i+ KIAA1223 539 DGRIPFILASQEGHYDCVQILLENKSNIDQ 568 SM00248: domain 12 of 17, from 572 to 601: score 33.0, E = 4.1e-05 *->dGrTpLHlAaengnlevvklLldkgadina<-* dGr++L +Aa +g+ ++v+lL ++gad+n+ KIAA1223 572 DGRNALRVAALEGHRDIVELLFSHGADVNC 601 SM00248: domain 13 of 17, from 605 to 634: score 19.4, E = 0.5 *->dGrTpLHlAaengnlevvklLldkgadina<-* dGr L++ a +++l +++++l++ga+++a KIAA1223 605 DGRPTLYILALENQLTMAEYFLENGANVEA 634 SM00248: domain 14 of 17, from 638 to 667: score 34.9, E = 1.1e-05 *->dGrTpLHlAaengnlevvklLldkgadina<-* +GrT+LH+ + g++e+v+ L+ + ad+na KIAA1223 638 EGRTALHVSCWQGHMEMVQVLIAYHADVNA 667 SM00248: domain 15 of 17, from 671 to 700: score 25.8, E = 0.0059 *->dGrTpLHlAaengnlevvklLldkgadina<-* + r++L Aa g+++vv+lL+++ga ++ KIAA1223 671 EKRSALQSAAWQGHVKVVQLLIEHGAVVDH 700 SM00248: domain 16 of 17, from 704 to 733: score 36.5, E = 3.6e-06 *->dGrTpLHlAaengnlevvklLldkgadina<-* +G T+L +Aa++g+++vv+ Ll++gad+n KIAA1223 704 QGATALCIAAQEGHIDVVQVLLEHGADPNH 733 SM00248: domain 17 of 17, from 737 to 767: score 19.2, E = 0.6 *->dGrTpLHlAaengnlevvklLldkga.dina<-* GrT++ +Aa+ng+ ++klL ++ga+++n KIAA1223 737 FGRTAMRVAAKNGHSQIIKLLEKYGAsSLNG 767 //