hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-20483223/chunk_1/iprscan-20080501-20483223.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1223 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00023.20.ls Ankyrin repeat 565.6 4.5e-167 18 PF00023.20.fs Ankyrin repeat 543.7 1.8e-160 19 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00023.20.ls 1/18 152 203 .. 1 33 [] 8.1 2 PF00023.20.fs 1/19 155 172 .. 16 33 .] 9.5 0.12 PF00023.20.fs 2/19 184 203 .. 14 33 .] 8.5 0.22 PF00023.20.ls 2/18 204 236 .. 1 33 [] 31.8 2.2e-06 PF00023.20.fs 3/19 204 236 .. 1 33 [] 29.8 2.5e-07 PF00023.20.ls 3/18 237 269 .. 1 33 [] 42.1 1.8e-09 PF00023.20.fs 4/19 237 269 .. 1 33 [] 40.1 3.4e-10 PF00023.20.ls 4/18 270 302 .. 1 33 [] 31.1 3.6e-06 PF00023.20.fs 5/19 270 302 .. 1 33 [] 29.1 4e-07 PF00023.20.ls 5/18 303 335 .. 1 33 [] 28.8 1.7e-05 PF00023.20.fs 6/19 303 335 .. 1 33 [] 26.9 1.7e-06 PF00023.20.ls 6/18 336 368 .. 1 33 [] 39.1 1.4e-08 PF00023.20.fs 7/19 336 368 .. 1 33 [] 37.1 2.2e-09 PF00023.20.ls 7/18 369 406 .. 1 33 [] 35.6 1.6e-07 PF00023.20.fs 8/19 369 406 .. 1 33 [] 33.6 2.1e-08 PF00023.20.fs 9/19 407 439 .. 1 33 [] 42.7 6.3e-11 PF00023.20.ls 8/18 407 439 .. 1 33 [] 44.7 2.9e-10 PF00023.20.ls 9/18 440 472 .. 1 33 [] 29.6 1e-05 PF00023.20.fs 10/19 440 472 .. 1 33 [] 27.6 1.1e-06 PF00023.20.ls 10/18 473 505 .. 1 33 [] 31.6 2.6e-06 PF00023.20.fs 11/19 473 505 .. 1 33 [] 29.6 2.9e-07 PF00023.20.ls 11/18 506 538 .. 1 33 [] 39.2 1.3e-08 PF00023.20.fs 12/19 506 538 .. 1 33 [] 37.2 2.2e-09 PF00023.20.ls 12/18 539 571 .. 1 33 [] 26.3 0.0001 PF00023.20.fs 13/19 539 571 .. 1 33 [] 24.3 8.7e-06 PF00023.20.fs 14/19 572 604 .. 1 33 [] 34.7 1.1e-08 PF00023.20.ls 13/18 572 604 .. 1 33 [] 36.7 7.5e-08 PF00023.20.ls 14/18 605 637 .. 1 33 [] 17.1 0.059 PF00023.20.fs 15/19 605 637 .. 1 33 [] 15.1 0.0032 PF00023.20.ls 15/18 638 670 .. 1 33 [] 41.3 3.2e-09 PF00023.20.fs 16/19 638 670 .. 1 33 [] 39.3 5.8e-10 PF00023.20.ls 16/18 671 703 .. 1 33 [] 25.6 0.00016 PF00023.20.fs 17/19 671 703 .. 1 33 [] 23.6 1.4e-05 PF00023.20.ls 17/18 704 736 .. 1 33 [] 41.4 2.8e-09 PF00023.20.fs 18/19 704 736 .. 1 33 [] 39.4 5.3e-10 PF00023.20.fs 19/19 737 763 .. 1 27 [. 15.7 0.0022 PF00023.20.ls 18/18 737 769 .. 1 33 [] 15.6 0.16 Alignments of top-scoring domains: PF00023.20.ls: domain 1 of 18, from 152 to 203: score 8.1, E = 2 *->dGfTPLHlAalrg...................nlevvklLlsqGAdl + L l ++ g + +++++ + ++++ ++ Ll++GA++ KIAA1223 152 KEQEVLQLLVKAGahvnseddrtscivrqaleREDSIRTLLDNGASV 198 naqdd<-* n d KIAA1223 199 NQCDS 203 PF00023.20.fs: domain 1 of 19, from 155 to 172: score 9.5, E = 0.12 *->evvklLlsqGAdlnaqdd<-* ev++lL+++GA +n dd KIAA1223 155 EVLQLLVKAGAHVNSEDD 172 PF00023.20.fs: domain 2 of 19, from 184 to 203: score 8.5, E = 0.22 *->nlevvklLlsqGAdlnaqdd<-* +++ ++ Ll++GA++n d KIAA1223 184 REDSIRTLLDNGASVNQCDS 203 PF00023.20.ls: domain 2 of 18, from 204 to 236: score 31.8, E = 2.2e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+T L Aa++g+l+vv lL+s+GAdl + d KIAA1223 204 NGRTLLANAAYSGSLDVVNLLVSRGADLEIEDA 236 PF00023.20.fs: domain 3 of 19, from 204 to 236: score 29.8, E = 2.5e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+T L Aa++g+l+vv lL+s+GAdl + d KIAA1223 204 NGRTLLANAAYSGSLDVVNLLVSRGADLEIEDA 236 PF00023.20.ls: domain 3 of 18, from 237 to 269: score 42.1, E = 1.8e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G TPL lAa+ g+++vv +L+++GA++n++d KIAA1223 237 HGHTPLTLAARQGHTKVVNCLIGCGANINHTDQ 269 PF00023.20.fs: domain 4 of 19, from 237 to 269: score 40.1, E = 3.4e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G TPL lAa+ g+++vv +L+++GA++n++d KIAA1223 237 HGHTPLTLAARQGHTKVVNCLIGCGANINHTDQ 269 PF00023.20.ls: domain 4 of 18, from 270 to 302: score 31.1, E = 3.6e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+T+L Aa g++evv+ Ll++G ++ d KIAA1223 270 DGWTALRSAAWGGHTEVVSALLYAGVKVDCADA 302 PF00023.20.fs: domain 5 of 19, from 270 to 302: score 29.1, E = 4e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+T+L Aa g++evv+ Ll++G ++ d KIAA1223 270 DGWTALRSAAWGGHTEVVSALLYAGVKVDCADA 302 PF00023.20.ls: domain 5 of 18, from 303 to 335: score 28.8, E = 1.7e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* d +T L Aa g++++v Ll++GA++n d+ KIAA1223 303 DSRTVLRAAAWGGHEDIVLNLLQHGAEVNKADN 335 PF00023.20.fs: domain 6 of 19, from 303 to 335: score 26.9, E = 1.7e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* d +T L Aa g++++v Ll++GA++n d+ KIAA1223 303 DSRTVLRAAAWGGHEDIVLNLLQHGAEVNKADN 335 PF00023.20.ls: domain 6 of 18, from 336 to 368: score 39.1, E = 1.4e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+T+L Aa++g+ e+v+ Ll++GA++n+ d KIAA1223 336 EGRTALIAAAYMGHREIVEHLLDHGAEVNHEDV 368 PF00023.20.fs: domain 7 of 19, from 336 to 368: score 37.1, E = 2.2e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+T+L Aa++g+ e+v+ Ll++GA++n+ d KIAA1223 336 EGRTALIAAAYMGHREIVEHLLDHGAEVNHEDV 368 PF00023.20.ls: domain 7 of 18, from 369 to 406: score 35.6, E = 1.6e-07 *->dGfTPLHlAalrg.....nlevvklLlsqGAdlnaqdd<-* dG+T+L +Aal+ + ++++++vv+lL+++GA++++ d+ KIAA1223 369 DGRTALSVAALCVpaskgHASVVSLLIDRGAEVDHCDK 406 PF00023.20.fs: domain 8 of 19, from 369 to 406: score 33.6, E = 2.1e-08 *->dGfTPLHlAalrg.....nlevvklLlsqGAdlnaqdd<-* dG+T+L +Aal+ + ++++++vv+lL+++GA++++ d+ KIAA1223 369 DGRTALSVAALCVpaskgHASVVSLLIDRGAEVDHCDK 406 PF00023.20.fs: domain 9 of 19, from 407 to 439: score 42.7, E = 6.3e-11 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+TPL +Aa+ g+++vv lLl+ GAd++++d+ KIAA1223 407 DGMTPLLVAAYEGHVDVVDLLLEGGADVDHTDN 439 PF00023.20.ls: domain 8 of 18, from 407 to 439: score 44.7, E = 2.9e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+TPL +Aa+ g+++vv lLl+ GAd++++d+ KIAA1223 407 DGMTPLLVAAYEGHVDVVDLLLEGGADVDHTDN 439 PF00023.20.ls: domain 9 of 18, from 440 to 472: score 29.6, E = 1e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+TPL Aa++g+++vv Ll GA ++ d KIAA1223 440 NGRTPLLAAASMGHASVVNTLLFWGAAVDSIDS 472 PF00023.20.fs: domain 10 of 19, from 440 to 472: score 27.6, E = 1.1e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+TPL Aa++g+++vv Ll GA ++ d KIAA1223 440 NGRTPLLAAASMGHASVVNTLLFWGAAVDSIDS 472 PF00023.20.ls: domain 10 of 18, from 473 to 505: score 31.6, E = 2.6e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+T L +A+ gn+evv+ Ll++G d n++dd KIAA1223 473 EGRTVLSIASAQGNVEVVRTLLDRGLDENHRDD 505 PF00023.20.fs: domain 11 of 19, from 473 to 505: score 29.6, E = 2.9e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+T L +A+ gn+evv+ Ll++G d n++dd KIAA1223 473 EGRTVLSIASAQGNVEVVRTLLDRGLDENHRDD 505 PF00023.20.ls: domain 11 of 18, from 506 to 538: score 39.2, E = 1.3e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+TPLH+Aa+ g+ +++ L++qGA n d+ KIAA1223 506 AGWTPLHMAAFEGHRLICEALIEQGARTNEIDN 538 PF00023.20.fs: domain 12 of 19, from 506 to 538: score 37.2, E = 2.2e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+TPLH+Aa+ g+ +++ L++qGA n d+ KIAA1223 506 AGWTPLHMAAFEGHRLICEALIEQGARTNEIDN 538 PF00023.20.ls: domain 12 of 18, from 539 to 571: score 26.3, E = 0.0001 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+ P lA++ g++++v+ Ll++ +++ + KIAA1223 539 DGRIPFILASQEGHYDCVQILLENKSNIDQRGY 571 PF00023.20.fs: domain 13 of 19, from 539 to 571: score 24.3, E = 8.7e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+ P lA++ g++++v+ Ll++ +++ + KIAA1223 539 DGRIPFILASQEGHYDCVQILLENKSNIDQRGY 571 PF00023.20.fs: domain 14 of 19, from 572 to 604: score 34.7, E = 1.1e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+ +L +Aal g+ ++v+lL s+GAd+n +d KIAA1223 572 DGRNALRVAALEGHRDIVELLFSHGADVNCKDA 604 PF00023.20.ls: domain 13 of 18, from 572 to 604: score 36.7, E = 7.5e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+ +L +Aal g+ ++v+lL s+GAd+n +d KIAA1223 572 DGRNALRVAALEGHRDIVELLFSHGADVNCKDA 604 PF00023.20.ls: domain 14 of 18, from 605 to 637: score 17.1, E = 0.059 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+ L + al ++l +++++l++GA++ a d KIAA1223 605 DGRPTLYILALENQLTMAEYFLENGANVEASDA 637 PF00023.20.fs: domain 15 of 19, from 605 to 637: score 15.1, E = 0.0032 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+ L + al ++l +++++l++GA++ a d KIAA1223 605 DGRPTLYILALENQLTMAEYFLENGANVEASDA 637 PF00023.20.ls: domain 15 of 18, from 638 to 670: score 41.3, E = 3.2e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+T+LH+ + g++e+v+ L+ + Ad+na d+ KIAA1223 638 EGRTALHVSCWQGHMEMVQVLIAYHADVNAADN 670 PF00023.20.fs: domain 16 of 19, from 638 to 670: score 39.3, E = 5.8e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+T+LH+ + g++e+v+ L+ + Ad+na d+ KIAA1223 638 EGRTALHVSCWQGHMEMVQVLIAYHADVNAADN 670 PF00023.20.ls: domain 16 of 18, from 671 to 703: score 25.6, E = 0.00016 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + +++L Aa g+++vv+lL+++GA ++++ + KIAA1223 671 EKRSALQSAAWQGHVKVVQLLIEHGAVVDHTCN 703 PF00023.20.fs: domain 17 of 19, from 671 to 703: score 23.6, E = 1.4e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + +++L Aa g+++vv+lL+++GA ++++ + KIAA1223 671 EKRSALQSAAWQGHVKVVQLLIEHGAVVDHTCN 703 PF00023.20.ls: domain 17 of 18, from 704 to 736: score 41.4, E = 2.8e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G T+L +Aa+ g+++vv+ Ll++GAd+n+ d KIAA1223 704 QGATALCIAAQEGHIDVVQVLLEHGADPNHADQ 736 PF00023.20.fs: domain 18 of 19, from 704 to 736: score 39.4, E = 5.3e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G T+L +Aa+ g+++vv+ Ll++GAd+n+ d KIAA1223 704 QGATALCIAAQEGHIDVVQVLLEHGADPNHADQ 736 PF00023.20.fs: domain 19 of 19, from 737 to 763: score 15.7, E = 0.0022 *->dGfTPLHlAalrgnlevvklLlsqGAd<-* G+T+ +Aa++g+ +++klL ++GA+ KIAA1223 737 FGRTAMRVAAKNGHSQIIKLLEKYGAS 763 PF00023.20.ls: domain 18 of 18, from 737 to 769: score 15.6, E = 0.16 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+ +Aa++g+ +++klL ++GA+ KIAA1223 737 FGRTAMRVAAKNGHSQIIKLLEKYGASSLNGCS 769 //