# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh03567.fasta.huge -Q ../query/KIAA1222.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1222, 742 aa
 vs ./tmplib.24314 library

1986763 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 8.7353+/-0.00876; mu= -2.6912+/- 0.591
 mean_var=334.3036+/-80.845, 0's: 0 Z-trim: 10  B-trim: 0 in 0/40
 Lambda= 0.070146

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0300  ( 2847 res)   hf00389s1                  (2847)  240 39.4   0.006


>>KIAA0300  ( 2847 res)   hf00389s1                       (2847 aa)
 initn: 281 init1: 146 opt: 240  Z-score: 144.7  bits: 39.4 E(): 0.006
Smith-Waterman score: 263;  26.748% identity (58.359% similar) in 329 aa overlap (1-323:218-510)

                                             10        20        30
KIAA12                               AKQQRKELAGGDFTSPDASASSCGKEVPED
                                     ::. ..    : .. : :.      ..::.
KIAA03 KHKAHSTYNGNSSNSSEPGETPTLELGDRTAKKGKRTRKFGVISRPPAN------KAPEE
       190       200       210       220       230             240 

               40        50        60        70        80        90
KIAA12 SNNFDGSHVYMHSDYNVYRVRSRYNSDWGETGTEQDEEEDSDENSYYQPDMEYSEIVGLP
       :..  : .:   :: .. ....  . . :.  . : :.  .. .    : .: :: :   
KIAA03 SKGSAGCEV--SSDPST-ELENGPDPELGNGHVFQLENGPDSLKEVAGPHLERSE-VDRG
             250          260       270       280       290        

              100       110       120       130       140       150
KIAA12 EEEEIPANRKIKFSSAPIKVFNTYSNEDYDRRNDEVDPVAASAEYELEKRVEKLELFPVE
        :..:: .     .:   . :.  .. :. . .: .      :. :.  :. :.::.   
KIAA03 TEHRIPKTDAPLTTSNDKRRFSKGGKTDF-QSSDCL------AREEV-GRIWKMELL---
       300       310       320        330              340         

              160       170       180       190       200       210
KIAA12 LEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLV
         :. :::::.. : : :.  . .  .: :  : :::::.::::....:... ..:  ::
KIAA03 --KESDGLGIQVSG-GRGSKRSPH--AIVVTQVKEGGAAHRDGRLSLGDELLVINGHLLV
          350        360         370       380       390       400 

              220       230       240       250       260       270
KIAA12 GVTQNFAATVLRNTKGNVRFVIGREKPGQVSEVAQLISQTLEQERRQRELLEQHYAQYDA
       :.... :...::.. : :..:..  : ... .. .: :..: .   .   .:.  .  : 
KIAA03 GLSHEEAVAILRSATGMVQLVVAS-KENSAEDLLRLTSKSLPDLTSS---VEDVSSWTDN
             410       420        430       440          450       

              280            290       300        310       320    
KIAA12 DDDETGEYATDEEEDE-----VGPVLPGSDMAIEVFELPENE-DMFSPSELDTSKLSHKF
       .:.:.     : ::::     :  ..::.:   .:    :.. .. ::..  ..:.. : 
KIAA03 EDQEA-----DGEEDEGTSSSVQRAMPGTDEPQDVCGAEESKGNLESPKQ-GSNKIKLKS
       460            470       480       490       500        510 

          330       340       350       360       370       380    
KIAA12 KELQIKHAVTEAEIQKLKTKLQAAENEKVRWELEKTQLQQNIEENKERMLKLESYWIEAQ
                                                                   
KIAA03 RLSGGVHRLESVEEYNELMVRNGDPRIRMLEVSRDGRKHSLPQLLDSSSASQEYHIVKKS
             520       530       540       550       560       570 




742 residues in 1 query   sequences
1986763 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:13:42 2008 done: Thu Dec 18 15:13:42 2008
 Total Scan time:  0.570 Total Display time:  0.040

Function used was FASTA [version 34.26.5 April 26, 2007]