hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-20433273/chunk_1/iprscan-20080501-20433273.nocrc
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Query sequence: KIAA1221
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 150.0    2.5e-40   8

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/8     365   387 ..     1    23 []    20.6     0.22
SM00355      2/8     403   425 ..     1    23 []    32.1  7.5e-05
SM00355      3/8     451   473 ..     1    23 []    17.2      2.3
SM00355      4/8     480   503 ..     1    23 []    14.4      7.4
SM00355      5/8     541   564 ..     1    23 []    20.3     0.27
SM00355      6/8     918   940 ..     1    23 []    18.1      1.2
SM00355      7/8     993  1015 ..     1    23 []    21.0     0.16
SM00355      8/8    1216  1242 ..     1    23 []     6.2       63

Alignments of top-scoring domains:
SM00355: domain 1 of 8, from 365 to 387: score 20.6, E = 0.22
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ C+  f+ k++L rHm+ H   
    KIAA1221   365    YPCTK-CNVNFREKkHLHRHMMYH    387  

SM00355: domain 2 of 8, from 403 to 425: score 32.1, E = 7.5e-05
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C + Cg++f+++++L +Hm +H   
    KIAA1221   403    YACRE-CGRTFRDRnSLLKHMIIH    425  

SM00355: domain 3 of 8, from 451 to 473: score 17.2, E = 2.3
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++Cp+ C + ++ ++ +++H ++H   
    KIAA1221   451    LQCPQ-CVFGTNCPkTFVQHAKTH    473  

SM00355: domain 4 of 8, from 480 to 503: score 14.4, E = 7.4
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y C++ C++   ++++L+ H    H   
    KIAA1221   480    YCCEE-CNFMAVTEnELECHRGiAH    503  

SM00355: domain 5 of 8, from 541 to 564: score 20.3, E = 0.27
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y C++ C++++s k+ Lk+H    H   
    KIAA1221   541    YICKM-CPFTTSAKsVLKKHTEyLH    564  

SM00355: domain 6 of 8, from 918 to 940: score 18.1, E = 1.2
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                        Cp+ C+ +f +   L +H+r H   
    KIAA1221   918    KSCPY-CPATFETGvGLSNHVRGH    940  

SM00355: domain 7 of 8, from 993 to 1015: score 21.0, E = 0.16
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cg  f +k  L +H+r H   
    KIAA1221   993    HTCQL-CGGWFDTKiGLSNHVRGH    1015 

SM00355: domain 8 of 8, from 1216 to 1242: score 6.2, E = 63
                   *->ykCpigCgksfssk.aLkr....HmrvH<-*
                      ++C + Cg +f+ + + +++  +H+++H   
    KIAA1221  1216    LRCRF-CGLVFRGPlSVQEdwikHLQRH    1242 

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