hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-20415549/chunk_1/iprscan-20080501-20415549.nocrc
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Query sequence: KIAA1220
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00079                                                 377.9   6.1e-109   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00079    1/1     220   589 ..     1   296 []   377.9 6.1e-109

Alignments of top-scoring domains:
SM00079: domain 1 of 1, from 220 to 589: score 377.9, E = 6.1e-109
                   *->tlkVttrilekPfvmfkknpeglkiDPitgnkcfeGyCIDLlealak
                      tlkV+t +le+Pfvm+ +n++g+       +k+++G++ID+l+alak
    KIAA1220   220    TLKVVT-VLEEPFVMVAENILGQ-------PKRYKGFSIDVLDALAK 258  

                   ilgFtYelelVpDGkYGskdantgnWnGmIgeLirgeADmAVapLTItae
                   +lgF+Ye++  pDG+YG++ +n  +WnGmIgeLi+++AD+A++++TIt+e
    KIAA1220   259 ALGFKYEIYQAPDGRYGHQLHN-TSWNGMIGELISKRADLAISAITITPE 307  

                   RervVDFTkPFmelGIsILvkkpdkqksslfsFLePf.............
                   Re+vVDF+k +m+++++IL+kkp+  k+s+fs ++Pf+           +
    KIAA1220   308 RESVVDFSKRYMDYSVGILIKKPEE-KISIFSLFAPFdfavwaciaaaip 356  

                   ..................................................
                     +      ++ +  + ++  +++++ + + ++      +   +++++++
    KIAA1220   357 vvgvlifvlnriqavraqsaaqprpsasatlhsaiwivygafvqqggess 406  

                   ........................skkLAAfLTvermespIssveDLakr
                    ++   +   ++    +    ++ + +LAAfLTv+rm  pI++++DL+k 
    KIAA1220   407 vnsmamrivmgswwlftlivcssyTANLAAFLTVSRMDNPIRTFQDLSK- 455  

                   npQtkieyGTvrgssTeefFkr....p.SkiptysrmwryMssrskspsv
                     Q +++yGTvr+s+++e+F+ ++++p ++++t++ +wr + s++  +++
    KIAA1220   456 --QVEMSYGTVRDSAVYEYFRAkgtnPlEQDSTFAELWRTI-SKNGGADN 502  

                   fvkslseGvqrvlnskGnYAFlmEstyleYeasrDpnCdYKLvtvGevfg
                   +v+s seG+++++++  nYAFl++++++eY+a +D++C+   + +G++++
    KIAA1220   503 CVSSPSEGIRKAKKG--NYAFLWDVAVVEYAALTDDDCS--VTVIGNSIS 548  

                   skGYGIAlpkgSPlrdklSrAILkLsEsGeLekLknKWwkk<-*
                   skGYGIAl++gSP+rd +S++IL+L+ +G+L+ Lk+KWw++   
    KIAA1220   549 SKGYGIALQHGSPYRDLFSQRILELQDTGDLDVLKQKWWPH    589  

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