# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh03489.fasta.huge -Q ../query/KIAA1220.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1220, 791 aa vs ./tmplib.24314 library 1986714 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 6.1791+/-0.0054; mu= 7.9808+/- 0.367 mean_var=122.0854+/-28.303, 0's: 0 Z-trim: 1 B-trim: 5 in 1/39 Lambda= 0.116076 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1973 ( 1176 res) pf00154 (1176) 192 44.2 9.6e-05 >>KIAA1973 ( 1176 res) pf00154 (1176 aa) initn: 221 init1: 156 opt: 192 Z-score: 177.0 bits: 44.2 E(): 9.6e-05 Smith-Waterman score: 500; 23.835% identity (56.093% similar) in 558 aa overlap (129-634:476-1013) 100 110 120 130 140 150 KIAA12 QISNLYLYDSVLMLANAFHRKLEDRKWHSMASLNCIRKSTKPWNGGRSMLDTIKKGHITG ...::.. : ..:. . . . . : KIAA19 FEHYVQDAMELVARAVATATMIQPELALIPSTMNCMEVETTNLTSGQYLSRFLANTTFRG 450 460 470 480 490 500 160 170 180 190 200 210 KIAA12 LTGVMEFREDSSNPYVQFEILGTTYSETFGKDM-RKLATWDSEKGLN--GSLQERPMGSR :.: .. . .. . .. . . .:: : .:..:.. : . : :. . . KIAA19 LSGSIRVKGSTIVSSENNFFIWNLQHDPMGKPMWTRLGSWQGGKIVMDYGIWPEQAQRHK 510 520 530 540 550 560 220 230 240 KIAA12 LQ-----GLTLKVVTVLEEPFVMVAE------NILGQ----------------------- . : :.:::..:.:::.. : :: KIAA19 THFQHPSKLHLRVVTLIEHPFVFTREVDDEGLCPAGQLCLDPMTNDSSTLDSLFSSLHSS 570 580 590 600 610 620 250 260 270 280 290 KIAA12 ----PKRYK----GFSIDVLDALAKALGFKYEIYQAPDGRYGHQLHNTSWNGMIGELISK : ..: :. ::.:. .:. ..: ...: . ::.:: .: :.:..:.:. KIAA19 NDTVPIKFKKCCYGYCIDLLEKIAEDMNFDFDLYIVGDGKYGAW-KNGHWTGLVGDLLRG 630 640 650 660 670 680 300 310 320 330 340 350 KIAA12 RADLAISAITITPERESVVDFSKRYMDYSVGILIKKPEEKISIFSLFAPFDFAVWACIAA : .:.....:. : .:.::.. ... :.:::.. . : ... :. ...: : . KIAA19 TAHMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRDTAAPIGAFMWPLHWTMWLGIFV 690 700 710 720 730 740 360 370 380 390 400 410 KIAA12 AIPVVGVLIFVLNRIQAVRAQSAAQPRPSASATLHSAIWIVYGA-FVQQGGESSVNSMAM :. ...:.. . . . .. : : .. ::. : :. : . . . . . KIAA19 ALHITAVFLTLYEWKSPFGLTPKGRNR-SKVFSFSSALNICYALLFGRTVAIKPPKCWTG 750 760 770 780 790 800 420 430 440 450 460 KIAA12 RIVMGSWWLFTLIVCSSYTANLAAFLTVSRMDNPIRTFQD--LSKQVE-MSYGTVRDSAV :..:. : .: .. :.::::::: .. .. . . ..: : . . . .::::.:.. KIAA19 RFLMNLWAIFCMFCLSTYTANLAAVMVGEKIYEELSGIHDPKLHHPSQGFRFGTVRESSA 810 820 830 840 850 860 470 480 490 500 510 520 KIAA12 YEYFRAKGTNPLEQDSTFAELWRTISKNGGADNCVSSPSEGIRKAKKGNY---AFLWDVA .: : ..: :. . . . : ..: .:.. :. ::. : : KIAA19 EDYVR----------QSFPEMHEYMRRY----NVPATP-DGVEYLKNDPEKLDAFIMDKA 870 880 890 900 530 540 550 560 570 580 KIAA12 VVEYAALTDDDCSVTVIGNSISSKGYGIALQHGSPYRDLFSQRILELQDTGDLDVLKQKW ...: . : ::.. ..:. .. .::::.: .:: .:. : . .. : .:.:..:: KIAA19 LLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTANISELISQYKSHGFMDMLHDKW 910 920 930 940 950 960 590 600 610 620 630 640 KIAA12 WPHMGRCDLTSHASAQADGKSLKLHSFAGVFCILAIGLLLACLVAALELWWNSNRCHQET . .. : : : ... ..: : :.:.: .: ::. :. :.. : KIAA19 Y-RVVPCGKRSFAVTETLQMGIK-H-FSGLFVLLCIGFGLSILTTIGEHIVYRLLLPRIK 970 980 990 1000 1010 1020 650 660 670 680 690 700 KIAA12 PKEDKEVNLEQVHRRMNSLMDEDIAHKQISPASIELSALEMGGLAPTQTLEPTREYQNTQ KIAA19 NKSKLQYWLHTSQRLHRAINTSFIEEKQQHFKTKRVEKRSNVGPRQLTVWNTSNLSHDNR 1030 1040 1050 1060 1070 1080 791 residues in 1 query sequences 1986714 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:13:37 2008 done: Thu Dec 18 15:13:38 2008 Total Scan time: 0.580 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]