hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-20233089/chunk_1/iprscan-20080501-20233089.nocrc
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Query sequence: KIAA1209
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00233                                                  36.0      5e-06   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00233     1/1      52   146 ..     1    82 []    36.0    5e-06

Alignments of top-scoring domains:
SM00233: domain 1 of 1, from 52 to 146: score 36.0, E = 5e-06
                   *->vikeGwLlkkskswkkryfvLfngvLlyyksk....kpkgsipLsgc
                      +++eG+ +++     +r ++Lf++ Ll++k+++++ ++k  i   ++
    KIAA1209    52    LVLEGTFRIQR-AKNERTLFLFDKLLLITKKRddtfTYKAHILCGNL 97   

                   .svre.p....cFeivt.dr...tlllqAeseeereeWvealqsaiaka<
                     v++ p+++ +F +++ ++++  +++qA+s+++++ Wv +l+++i ++ 
    KIAA1209    98 mLVEViPkeplSFSVFHyKNpklQHTVQAKSQQDKRLWVLHLKRLILEN  146  

                   -*
                     
    KIAA1209     -    -    

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