hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-20233089/chunk_1/iprscan-20080501-20233089.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1209
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00169.19.fs PH domain                                       30.8    6.4e-09   1
PF00169.19.ls PH domain                                       32.8    1.1e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00169.19.fs   1/1      52   144 ..     1    92 []    30.8  6.4e-09
PF00169.19.ls   1/1      52   144 ..     1    92 []    32.8  1.1e-06

Alignments of top-scoring domains:
PF00169.19.fs: domain 1 of 1, from 52 to 144: score 30.8, E = 6.4e-09
                   *->vikeGwLlkkggkkswkkRyfvLfddvLlyykdkk..kkpkgsipLs
                      ++ eG ++ +       +R ++Lfd+ Ll+ k++++++++k  i   
    KIAA1209    52    LVLEGTFRIQR---AKNERTLFLFDKLLLITKKRDdtFTYKAHILCG 95   

                   gi.qvtkvpdnkrkncFeirt.dr..etlllqaeseeerkeWvkaiqsai
                   ++  v+ +p+  ++ +F + +  +++ ++++qa+s+++++ Wv +++++i
    KIAA1209    96 NLmLVEVIPK--EPLSFSVFHyKNpkLQHTVQAKSQQDKRLWVLHLKRLI 143  

                   r<-*
                       
    KIAA1209   144 L    144  

PF00169.19.ls: domain 1 of 1, from 52 to 144: score 32.8, E = 1.1e-06
                   *->vikeGwLlkkggkkswkkRyfvLfddvLlyykdkk..kkpkgsipLs
                      ++ eG ++ +       +R ++Lfd+ Ll+ k++++++++k  i   
    KIAA1209    52    LVLEGTFRIQR---AKNERTLFLFDKLLLITKKRDdtFTYKAHILCG 95   

                   gi.qvtkvpdnkrkncFeirt.dr..etlllqaeseeerkeWvkaiqsai
                   ++  v+ +p+  ++ +F + +  +++ ++++qa+s+++++ Wv +++++i
    KIAA1209    96 NLmLVEVIPK--EPLSFSVFHyKNpkLQHTVQAKSQQDKRLWVLHLKRLI 143  

                   r<-*
                       
    KIAA1209   144 L    144  

//